BAC Information

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BAC

Clone NameMSMg01-497P12
Chromosome5 (Build37)
Map Location 98,313,075 - 98,313,260
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497P12.T7 (MSMg01no497_p12.b1)MSMg01-497P12.TJ (MSMg01no497_p12.g1)
ACCAG574409AG574410
length741753
length of high quality
(start - end)
397 (323 - 719)186 (441 - 626)
definitionCHROMAT_FILE: MSMg01no497_p12.b1 PHD_FILE: MSMg01no497_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:50 2005CHROMAT_FILE: MSMg01no497_p12.g1 PHD_FILE: MSMg01no497_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATAATACCGCG
GAATTCTCTGTTTACATAAGAAACCGANTTTTTGCTTGGGTTATTTGAAC
TTTTGGGGCTTAACTTCTTTAGTTTTTTATATATTTTGGATATTATCCCT
CTCTCAGATGTAGGGTTAGTGAAGATTTTTTTCCCCAATCTGTAGGTTGT
GATTTGTCATATTGATTGTGTCCTTTGCCTTACTGAAGCTTTGCAGTTTT
ATAAGGTCCCATTTATCAATTCTTGATATTAGAGGCTGAACCATTGGTAT
TCTGTTCAGGATATTTCTCCTTGTGCCAATGAGTCTGCGGTTCTTTCTTT
CTTTCTCTTTTATTAGATTCGTTGTATCTGGCTTTATGTTGATGTCCTTG
ATCCACTTGGACTTGAGCTTTGTACAAGGTGATAAATATGGGTCTATTTT
CATTCTCCCACATACAGACAACTAGTTAAACCAGCTCCATTTATTGAAGA
TGCTTTCTTTTTTCCACTGTGTTTTTGGCTTCTTTGTTAAAGATCAAGTG
TCCATAGGTATATGGGTTTATTTCTAGGTCTCCAATTCTATTCTATTGAT
TGACCTGAAAGTCTCTGTATCGATACCATACAGTTTTTATTACTGTTGCT
TTGTAGTACAGCTTGAGGTCAAGGATGGTTCCTCCCCCAGAAGAACATTT
ATTGTTGAGAATTGCTCTGGCTATCCTGGGTTTTTTGTTCT
AAACGATGACAGAGAGNAGGCCGGGNGGGNGCCTGGTTAGTCATTTTGTG
GNGACACNANACGATTTACCAGNCACCGGGCAGNNCCANNGNAAAANANC
CAACAGGNNCACAGNNGAANCANGGGCCGACGNCACGGGNANAANCCCGG
GNGNGCACANAGAAGGCNGGNAAGNACACCNAACCCNCNCCGGNGANGGN
CNNNGNAGACGNNNGNNNCNGNGNCNGCCNCNAAAACAGGACCAANGGCC
ACNNCCCCAAAAGGCANNNCANNCCNGAAGCAGGCACACACCCANACGNG
ANANNNNAAGAGCACCAAAAANACTTTTTTTTTTCNGGCNANGNNNCNNN
GGNAACCACCNCAAATTTTTTCAGAACCCCGCAGCAGGNNNGCACCACGA
GGGAAGNAAANAAACCTCTGCCTTTAACCCCCAAAATAGCTTCCTTGAGA
TTTGTTGCACTGGCTGGAGGATGTGTCATAAAAATACAACAAAGAGCTGT
AAATGAAGAGGGTGAGTCAGGAGTCTACACATAGACTGGGAAAGGATCAT
TCATAAGGTTCAAAGACAGATGGAATTCCATTGCCCTTAAAGTTATGAAC
CAGATTAATGTTATGCTTTAATCGCAGATCTTAGCAGAAATGACAATTTG
TTTTTTTTATTAATCTTCTTGGCAGAGGACATTGCGAATCTTTATGTGAC
ACTTTTCATACATAGCAATAGCTTCCGTGTGATTGATCTGGACACTATGT
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_p12.g1 MSMg01no497_p12.g1 CHROMAT_FILE:
MSMg01no497_p12.g1 PHD_FILE: MSMg01no497_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:50 2005
         (186 letters)



>mm_chr5_98312875_98313460
          Length = 586

 Score =  360 bits (186), Expect = e-104
 Identities = 186/186 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccttgagatttgttgcactggctggaggatgtgtcataaaaatacaacaaagagctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttccttgagatttgttgcactggctggaggatgtgtcataaaaatacaacaaagagctgt 327

                                                                       
Query: 61  aaatgaagagggtgagtcaggagtctacacatagactgggaaaggatcattcataaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaatgaagagggtgagtcaggagtctacacatagactgggaaaggatcattcataaggtt 267

                                                                       
Query: 121 caaagacagatggaattccattgcccttaaagttatgaaccagattaatgttatgcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaagacagatggaattccattgcccttaaagttatgaaccagattaatgttatgcttta 207

                 
Query: 181 atcgca 186
           ||||||
Sbjct: 206 atcgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)