BAC Information

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BAC

Clone NameMSMg01-498B05
Chromosome5 (Build37)
Map Location 130,872,986 - 130,873,508
singlet/doubletsinglet
Overlap genenone
Upstream geneSfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneCaln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498B05.T7 (MSMg01no498_b05.b1)MSMg01-498B05.TJ (MSMg01no498_b05.g1)
ACCAG574488AG574489
length755737
length of high quality
(start - end)
575 (53 - 627)636 (58 - 693)
definitionCHROMAT_FILE: MSMg01no498_b05.b1 PHD_FILE: MSMg01no498_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:58 2005CHROMAT_FILE: MSMg01no498_b05.g1 PHD_FILE: MSMg01no498_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTCTGTTTACCAGACAGGCCTTGATCCCCTGTGTGTG
TACCGCCTCTGACCGACTGATTTTTTTTTTTTTTTTGGTTTTTGGAGACA
GGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAG
GCTGGCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCAGGG
ATTAAAGGTGTGTGACACCACTGCCCGGCTTTTTTTAAATTTTTACTGTC
TATGTATGAGTGTTGGCCTGCATGTAAGTATGTGCACCATGTGCCCGAGG
AGCACAAAAAGGATCTCGGATGCTCTGACACTGGAGTTGCAGATGCTCCA
ACCTTGCTTTCCCTGTAATAGTAGCAAGTGTTCTTAACCACTGAGTCATC
GGACAGCCCTCACGGCCTTTTTGTTTTGCTTTTATTTACTTTTATGTGTA
TGGATGTTTTGCTCCCATTTATGTCTGTGCACTGTGTGTGGGAAGTGGCA
GAAGGTGTCAGGTCCCTTGGAACTAGAGTTACAGTTAGTGTTAGCTGCCA
TATGGGTGCTGGCAATCTCTGGAGTAGCACTCTCTCTACCAAGCTCTCTC
TCCAGTCCCTCAAGATTCCTTTTGAGTTTGATCTTGAGCCAAGTTGATTT
TTCTCTTAANTACAGTATGCTGAAGTCTTATCCACTGCAGTGTGTGCAGA
TTACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATCCCCCACAACAAAAACTGGGAATGGGAGAGAACAGAGAAT
GTCTGCAGTCTCAGTACTCAGGAGTTTGAGGTCACACATAGTTACGGAGG
AAGTTTGAGGCTAGCCTGAGCTACGTGATACCCTGTCTCAAAACAAAGCC
AACAACAACAACAACAAATGGATGGTAGGCTGAGTGTAGTGATCCACTGT
ACACCTGTAACCCCAATGCTCTGGAGTCTGAGGCAGAAGGATCACAAGGT
CTAAGCTAACCTGGGGCGCATAACGCATTCCCGCATAACCTGAGCTACAC
AGTAAAACTGGGGCAAGATAGAAAGACCAAAAGAGGAAAAAAAATGGAGG
GAACATGGGAAAGGAACGGAAGCCTGTCACCCTAGGATCTTGATTGTCCT
TCCTGCTATGAGTCAAGAAACTGTGACACAACTGACTTTGTCAGAACTGC
CTGCAGAGATAGCATGTGTTTTCACACATAGGAAATTCAAGTCAGCAAAT
GAGGGCCCGGGAGATGCTCTGTGGCTTGGAATGCCAGCTGATCTTGCACA
CTCAGCACCTGTGTCAGTCAGCTTACCACTGCCTGCGACACCCTCCTCTT
TCAAGGCACAGCATTCTTGCGACACGTACACACACAGAGAGACACCAGTG
AATTGTGCTTGAATGCTTTTGGCCTTGAGTGGAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_b05.g1 MSMg01no498_b05.g1 CHROMAT_FILE:
MSMg01no498_b05.g1 PHD_FILE: MSMg01no498_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:58 2005
         (636 letters)



>mm_chr5_130872474_130873508
          Length = 1035

 Score =  634 bits (328), Expect = 0.0
 Identities = 439/524 (83%), Gaps = 78/524 (14%)
 Strand = Plus / Minus

                                                                        
Query: 190  ctgtacacctgtaaccccaatgctctggagtctgaggcagaaggatcacaaggtctaagc 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 ctgtacacctgtaaccccaatgctctggagtctgaggcagaaggatcacaaggtctaagc 976

                                                                        
Query: 250  taacctggggcgcataacgcattcccgcataacctgagctacacagtaaaac-------- 301
             |||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 975  caacctggggcgcataacgcattcccgcataacctgagctacacagtaaaacaagataga 916

                                                                        
Query: 302  tggg--------------gca---------------ag------------------at-- 312
            ||||              |||               ||                  ||  
Sbjct: 915  tgggggacttttggtatagcattggaaatgtaaatgagctaaatacctaataaaaaatgg 856

                                                                        
Query: 313  --------------------agaaagaccaaaagaggaaaaaaaatggagggaacatggg 352
                                ||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 855  aaagaaaaaaaaaaaaaaaaagaaagaccaaaagagg-aaaaaaatggaggaaacatggg 797

                                                                        
Query: 353  aaaggaacggaagcctgtcaccctaggatcttgattgtccttcctgctatgagtcaagaa 412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  aaaggaacggaagcctgtcaccctaggatcttgattgtccttcctgctatgagtcaagaa 737

                                                                        
Query: 413  actgtgacacaactgactttgtcagaactgcctgcagagatagcatgtgttttcacacat 472
            |||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||
Sbjct: 736  actgtgacacaactgacaaagtcagaactgcctgcagagatagcatgtgttttctcacat 677

                                                                        
Query: 473  aggaaattcaagtcagcaaatgagggcccgggagatgctctgtggcttggaatgccagct 532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  aggaaattcaagtcagcaaatgagggcccgggagatgctctgtggcttggaatgccagct 617

                                                                        
Query: 533  gatcttgcacactcagcacctgtgtcagtcagcttaccactgcctgcgacaccctcctct 592
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 616  gatcttgcacactcagcacctatgtcagtcagcttaccactgcctgcgacaccctcctct 557

                                                        
Query: 593  ttcaaggcacagcattcttgcgacacgtacacacacagagagac 636
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  ttcaaggcacagcattcttgcgacacgtacacacacagagagac 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space:   641650
Effective search space used:   641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)