BAC Information

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BAC

Clone NameMSMg01-498H22
Chromosome5 (Build37)
Map Location 53,686,407 - 53,817,690
singlet/doubletdoublet
Overlap geneLOC100041198
Upstream geneSod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik
Downstream geneLOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498H22.T7 (MSMg01no498_h22.b1)MSMg01-498H22.TJ (MSMg01no498_h22.g1)
ACCAG574806AG574807
length780806
length of high quality
(start - end)		370 (46 - 415)458 (77 - 534)
definitionCHROMAT_FILE: MSMg01no498_h22.b1 PHD_FILE: MSMg01no498_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:33 2005CHROMAT_FILE: MSMg01no498_h22.g1 PHD_FILE: MSMg01no498_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,686,407 - 53,686,769)(53,817,233 - 53,817,690)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACGATATTATTTACCACCCTACTTCTAAGTGAGATGCATTCCGAA
GTCCTCCATGTTGGCGTTTTAACATATTTTGAGGGAAACCTATTTCAACC
TTAATGAAAGGCAGTATGTTGCTAAACTGGGGATCTAAACATGTGATTTA
ATCATAAGACAGCAGAGGCTTTATATTAGAAAAAGGGCCCAGGTGTGGGG
GTGCCTGTAGGTGTCACAGGGTAATGAACGGCAAAGAGATGAGAATGAAA
ACTTGGTTCAATTTGACTTCATTAAACTGGATCAGACTTTGGGGGTTCTG
ATGCCAGATGGTTTATTGGCAGCATGCTTAAACATAGGACTATTGGGGGG
GAAGGGGGAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCCCATAATGCTTAGCAGTGTG
GAAATCCAGGAGTCTAGGGTAAATTGATTCGTTGCTTGCAGCAGTTATTG
AACGGAACATCATTTTAGTGAGGAGAGAAACTTATTTTGAAGTGTAGCTT
CAGTATAAGGAGGTTGTAAGAACTTGTGTTTTATTATTGATCTCACAAGG
ACTGCAAGCAAGTAAGAAAAGGAACAGTGGGACAATGGGTTGTTTTCTTT
TTATTAGACACTTAATTTAGGACTCTGCTTTAAAGGCATGGTCGTTTCCT
GGGTTGTTTAAACTCTGCTGAATCATGTACAAATCACTTAGAATACTCAT
CATATTTTTGCTGGTGAATTTAGGAATGTAGGAGTTTCCCATAGTACATT
CAGTGAAGCCCCTTCTGTCGTGGGCATCTATGTTGTTCATCACTGGGTCC
ACACCTAGGGACCAGGGTGTGTTATATAAACCCAGGAGCAAAGGAAAGGG
CTGCCAGTCAGAGTCGGTTTTATTTCCTTATTTCTGGGGAAAGCTGCCTT
TCACCCCAGGCTGAGGTGAAGCTTGTCTCTCCTCCAGCCCCACTCAGTGA
CTTTTCCACCCCAGGCCCTAGGTCTATGCCTCACCCTGTCCCACCTTGGG
GAGGGAAATTTCTTTTCCGGTAAGGTTCTCCCCAATGGCCCTAAATAAAT
GGTTTAGGATTTTTCTTTAGGAAACTGTTGGAGGCCTAACTATAGTTTCC
ATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_h22.b1 MSMg01no498_h22.b1 CHROMAT_FILE:
MSMg01no498_h22.b1 PHD_FILE: MSMg01no498_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:33 2005
         (370 letters)



>mm_chr5_53686203_53686972
          Length = 770

 Score =  687 bits (355), Expect = 0.0
 Identities = 361/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacgatattatttaccaccctacttctaagtgagatgcattccgaagtcctccat 64
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgatattagttaccaccctacttctaagtgagatgcattccgaagtcctccat 264

                                                                       
Query: 65  gttggcgttttaacatattttgagggaaacctatttcaaccttaatgaaaggcagtatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttggcgttttaacatattttgagggaaacctatttcaaccttaatgaaaggcagtatgt 324

                                                                       
Query: 125 tgctaaactggggatctaaacatgtgatttaatcataagacagcagaggctttatattag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctaaactggggatctaaacatgtgatttaatcataagacagcagaggctttatattag 384

                                                                       
Query: 185 aaaaagggcccaggtgtgggggtgcctgtaggtgtcacagggtaatgaacggcaaagaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaagggcccaggtgtgggggtgcctgtaggtgtcacagggtaatgaacggcaaagaga 444

                                                                       
Query: 245 tgagaatgaaaacttggttcaatttgacttcattaaactggatcagactttgggggttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagaatgaaaacttggttcaatttgacttcattaaactggatcagactttgggggttct 504

                                                                       
Query: 305 gatgccagatggtttattggcagcatgcttaaacataggactattgggggggaaggggga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatgccagatggtttattggcagcatgcttaaacataggactattgggggggaaggggga 564

              
Query: 365 gga 367
           |||
Sbjct: 565 gga 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no498_h22.g1 MSMg01no498_h22.g1 CHROMAT_FILE:
MSMg01no498_h22.g1 PHD_FILE: MSMg01no498_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:33 2005
         (458 letters)



>mm_chr5_53817033_53817890
          Length = 858

 Score =  832 bits (430), Expect = 0.0
 Identities = 451/458 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccccataatgcttagcagtgtggaaatccaggagtctagggtaaattgattcgttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 acccccataatgcttagcagtgtggaaatccaggagtctagggtaaattgattcgttgct 599

                                                                       
Query: 61  tgcagcagttattgaacggaacatcattttagtgaggagagaaacttattttgaagtgta 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 598 tgcagcagttattgaacggaacatcattttagcgaggagagaaacttattttgaagtgta 539

                                                                       
Query: 121 gcttcagtataaggaggttgtaagaacttgtgttttattattgatctcacaaggactgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gcttcagtataaggaggttgtaagaacttgtgttttattattgatctcacaaggactgca 479

                                                                       
Query: 181 agcaagtaagaaaaggaacagtgggacaatgggttgttttctttttattagacacttaat 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 478 agcaagtaagaaaaggaacagtggaacaatgggttgttttctttttattagacacttaat 419

                                                                       
Query: 241 ttaggactctgctttaaaggcatggtcgtttcctgggttgtttaaactctgctgaatcat 300
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttaggactctgcaaaaaaggcatggtcgtttcctgggttgtttaaactctgctgaatcat 359

                                                                       
Query: 301 gtacaaatcacttagaatactcatcatatttttgctggtgaatttaggaatgtaggagtt 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 358 gtacaaatcacttagaatactcatcatatttttgttggtgaatttaggaatgtaggagtt 299

                                                                       
Query: 361 tcccatagtacattcagtgaagccccttctgtcgtgggcatctatgttgttcatcactgg 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 298 tcccatagtacattcagtgaagccccatctgtcgtgggcatctatgttgttcatcactgg 239

                                                 
Query: 421 gtccacacctagggaccagggtgtgttatataaaccca 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtccacacctagggaccagggtgtgttatataaaccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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