Query= MSMg01no499_j05.b1 MSMg01no499_j05.b1 CHROMAT_FILE:
MSMg01no499_j05.b1 PHD_FILE: MSMg01no499_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:59 2005
(588 letters)
>mm_chr5_45169838_45170824
Length = 987
Score = 687 bits (355), Expect = 0.0
Identities = 443/507 (87%), Gaps = 58/507 (11%)
Strand = Plus / Minus
Query: 2 gaattctt--aaaaaaaatgccttacaaacctgtatgttatatttataaactttacattg 59
|||||||| |||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaattcttaaaaaaaaaaggtc-tacaaacctgtatgttatatttataaactttacattg 446
Query: 60 tactaaagtcagcaaatgtcacagaattaaaatcagtaaatgcaaaagtggaggtttcca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tactaaagtcagcaaatgtcacagaattaaaatcagtaaatgcaaaagtggaggtttcca 386
Query: 120 tggcaactgtaactacccatattgcatataaaatggaatgtacattaggatttacattta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggcaactgtaactacccatattgcatataaaatggaatgtacattaggatttacattta 326
Query: 180 atcgtctattagtagaaaaaaaaagtcccgtatagaacaggtgcaatatggatttgtttg 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcgtctattagtag-aaaaaaaagtcccgtatagaacaggtgcaatatggatttgtttg 267
Query: 240 tgtgcttaaagcaacattttatcttttaaattttaggtttcttctgtctaaacctcctat 299
||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||
Sbjct: 266 tgtgcttaaagcaacattttatcttttaaattttaggtttcatctg-caaaacctcatat 208
Query: 300 ----------------------------------------------------atatattc 307
||||||||
Sbjct: 207 atatatatatatatatatatatatatatatatatatatatgtatgtatatacatatattc 148
Query: 308 aaattttaggcttctctagagaaggtgaattaagt-aaaaaaaaaaaaatagtgaatatt 366
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 147 aaattttaggcttctctagagaaggtgaattaagtaaaaaaaaaaaaaatagtgaatatt 88
Query: 367 aggacagaaataagggtatatccccagagttccatgctgtacagcacttccatctaagct 426
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 87 aggacagaaataagggtatatccccagagttccatgctgcacagcacttccatctaagct 28
Query: 427 aacagtcaccttggtagctttcatgga 453
|||||||||||||||||||||||||||
Sbjct: 27 aacagtcaccttggtagctttcatgga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_j05.g1 MSMg01no499_j05.g1 CHROMAT_FILE:
MSMg01no499_j05.g1 PHD_FILE: MSMg01no499_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:59 2005
(600 letters)
>mm_chr5_45024418_45025417
Length = 1000
Score = 1137 bits (588), Expect = 0.0
Identities = 597/600 (99%)
Strand = Plus / Plus
Query: 1 tcttctttgaacaagtgatggtttattttataatgagcaacagatgtctgggtgaggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttctttgaacaagtgatggtttattttataatgagcaacagatgtctgggtgaggaat 260
Query: 61 aaagtggagaggaaagtaataattcagtaagataatttaaaaaaattaaaaatcgaagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtggagaggaaagtaataattcagtaagataatttaaaaaaattaaaaatcgaagtg 320
Query: 121 ccactgtaaatctccttagaattcttgcagcagacagagccaaagcaatgcctcaaatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactgtaaatctccttagaattcttgcagcagacagagccaaagcaatgcctcaaatag 380
Query: 181 gaaagagcctgtcattgttccagttacagaaggggacccttactgagcacacttctgtct 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gaaagagcctgtcattgttccagttacagaaggggacccttattgagcacacttctgtct 440
Query: 241 taagatctctcagtctttctgtaaactaactacaaatactccaaggttaggcaaagctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagatctctcagtctttctgtaaactaactacaaatactccaaggttaggcaaagctgg 500
Query: 301 ggtgcttttgaacaaaacatttgcaacatcaatttctttgttttctgtgacacaagtgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgcttttgaacaaaacatttgcaacatcaatttctttgttttctgtgacacaagtgta 560
Query: 361 cttgatttgagagacagacgctataatccatcaactaggggctaagacaataatgactca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgatttgagagacagacgctataatccatcaactaggggctaagacaataatgactca 620
Query: 421 gcagctgacaaggcttgttacacaagcctaatgagctgaacctggatatcagaaaacctt 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 gcagctgacaaggcttgttacacaagcctaatgagctgagcctggatatcagaaaacctt 680
Query: 481 ggaaaaatctgtatatggtatcatacatgttcatgttactctgggtgcttctatggagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaaaatctgtatatggtatcatacatgttcatgttactctgggtgcttctatggagat 740
Query: 541 gtgggaagcagagacaatgacctatcttacctagaagctcatggtttagttttcgttgtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgggaagcagagacaatgacctatcttacctagaagctcatggtttagttttcgttgtg 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
