BAC Information

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BAC

Clone NameMSMg01-501A23
Chromosome5 (Build37)
Map Location 39,589,027 - 39,589,178
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501A23.T7 (MSMg01no501_a23.b1)MSMg01-501A23.TJ (MSMg01no501_a23.g1)
ACCAG576749AG576750
length702721
length of high quality
(start - end)		626 (3 - 628)565 (58 - 622)
definitionCHROMAT_FILE: MSMg01no501_a23.b1 PHD_FILE: MSMg01no501_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:49 2005CHROMAT_FILE: MSMg01no501_a23.g1 PHD_FILE: MSMg01no501_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATATTCAGAGGATCCGCGGAATTCATGAAATTCTTAGGCAAA
TGGATGGGACTAGAAAATATCATCCTGAGTGAGGTAACCCAATCCCAGAA
GAACACACATGGTATGCACTCACTGATAAGTGGATATTAGCCCAGAAGTT
TGGAATACCCAAGATACAGTTCAGAGACCACATGAAGCTCAAGACAAAGG
AAGAACAAAGTGTGGATACTTTGGTCCTTCTTAGAAGGGGGAACAAAATA
CCCATGGGAGGAAACACAGAGACAAAGTTTGGAGCCGAAACTTAAGAAAA
GGCCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATATACAGTTGTC
AAACTCAGACACTATTGTGGATGCCAACAAGTGCTTGCTGACAGGAGCTT
GATATAGCTGTCTAGTGAGAGGCTTTACCAGTGCCTGACAGACACAGAAG
TGGATGCTCACAGCCATCCATTGGACTGAGCACTGGGACCTCAATGGAAG
AGCCAGAGAAAGGACCTAAGGAGCTGAAGGAGTTTGCAGCCCCATAGGAG
GAACAACAACATGAACCAACCAGTACCCCAAGAGCTCCCAGGGACTAAAC
CACCAACCAAAGAACACACATGGAGTGACCCATGTGTGGCTCCAGCTACA
TATGTAGCAGAGGATGACCTTGTGGGACATCTATGAGAGGAGTTGGTCCC
AN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGGTGGAGCAAATCATAGGGAATTTCTCAACTCTCCACAGTCA
GCTTGAACTTTGTTCTCCACAAGATGAGAAGATACCTACTTAAGAAGTAG
ACTGATTGGAACTGGCTTTTTAGTAGTCACTATAAAGAGAATATCAAGAG
TAGACTAGAAATAGGCCATGGGTAGATCCTAATAGAAGATTTTGAAAGAA
TTCAGCTAACATACATGTAAGAGGGAAGTAGTGTCCCACAATCCTGATGA
CCAGAAGGGAAGGCAAATATCAAGGTGCCAAGGTGTAATTTGTTCCCACG
CTATAAGGAAGAGGGTCTCTACATCTCTGCTCAAGCACCAGGTAACCAGT
AACCTTGTAGTTAGAAATCGCTTTTGGCCTCATTGACTCCTACATTTATC
TCCATGTGGAATTCTCCTTCTGTGTATGTGTCTCTAATGTTTCCCCTTTT
ATAAGGAAAAAAAACAGACCTATGGGACAATGGCCCTCAGTAATGACCCT
GTTCTAGAATGACCATACCCATGACCATACCCATCGAGACCTATCGGCAA
ATACGGCCATAATTTGACTTCGTATAAGATGGTACTTTGACATACATATG
ATTAAGGGGACATAATCTAATCTTTAATAATGTGATTGGTGAAGAGTAAG
AGAAAAAAGAAGTTTGCAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_a23.g1 MSMg01no501_a23.g1 CHROMAT_FILE:
MSMg01no501_a23.g1 PHD_FILE: MSMg01no501_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:50 2005
         (565 letters)



>mm_chr5_39588827_39589791
          Length = 965

 Score =  294 bits (152), Expect = 1e-83
 Identities = 152/152 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtggagcaaatcatagggaatttctcaactctccacagtcagcttgaactttgttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aggtggagcaaatcatagggaatttctcaactctccacagtcagcttgaactttgttctc 293

                                                                       
Query: 61  cacaagatgagaagatacctacttaagaagtagactgattggaactggctttttagtagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cacaagatgagaagatacctacttaagaagtagactgattggaactggctttttagtagt 233

                                           
Query: 121 cactataaagagaatatcaagagtagactaga 152
           ||||||||||||||||||||||||||||||||
Sbjct: 232 cactataaagagaatatcaagagtagactaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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