Query= MSMg01no501_b23.b1 MSMg01no501_b23.b1 CHROMAT_FILE:
MSMg01no501_b23.b1 PHD_FILE: MSMg01no501_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:54 2005
(560 letters)
>mm_chr5_77172421_77173382
Length = 962
Score = 1004 bits (519), Expect = 0.0
Identities = 549/561 (97%), Gaps = 6/561 (1%)
Strand = Plus / Minus
Query: 4 ggaattccttaatg---ttatttcttcgtagtttactcccaggcttgctgattctcttct 60
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 762 ggaattccttaatgcaa--atttctttgtagtttactcccaggcttgctgattctcttct 705
Query: 61 ttcctgctctttgtggggagggaatggcttttagaaaactagcttatgagaatcatcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttcctgctctttgtggggagggaatggcttttagaaaactagcttatgagaatcatcaac 645
Query: 121 tgtcacatggaaacctttctgaacacatcagagggga-ttttatctcctctctcggtcca 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 644 tgtcacatggaaacctttctgaacacatcagaggggatttttatctcctctctcggtcca 585
Query: 180 aagcactgtggtctttcccagtggtgctaagtacggggccactgtcattaacctctcttg 239
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 584 aagcactgtggtctttcccagtggtgctcagtacggggccactgtcattaacctctcttg 525
Query: 240 gtgtcatgagctggtccaacctgctagtgggaggagtcaaagtggggaaaccagagagaa 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 524 gtgtcatgagctggtccaacctgctagtgggagaagtcaaagtggggaaaccagagagaa 465
Query: 300 gtcagctcataacaatgtcttgtcatgtgacacaccagggaaacaggagagaggggtgtt 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtcagcacataacaatgtcttgtcatgtgacacaccagggaaacaggagagaggggtgtt 405
Query: 360 tggagacagaagagtgagtgtgcatgagaggcaggggcatcacttgggcgatcaggtaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tggagacagaagagtgagtgtgcatgagaggcaggggcatcacttgggcgatcaggtaag 345
Query: 420 agacacctgaggagcgcagtcacggtgaggcctgaaggacagagactgtgtaatgcgtga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agacacctgaggagcgcagtcacggtgaggcctgaaggacagagactgtgtaatgcgtga 285
Query: 480 gatgtgctcatggaaagccctgatggggaagagatgagagcgtttcagttgctcagtgaa 539
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 284 gatgtgctcatggaaagccctgatggggaagagatgagagcatttcagttgctcagtgaa 225
Query: 540 acaatgtgatgtttctcttgt 560
||||||||||||||||||||
Sbjct: 224 gcaatgtgatgtttctcttgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 962
Length adjustment: 10
Effective length of query: 550
Effective length of database: 952
Effective search space: 523600
Effective search space used: 523600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_b23.g1 MSMg01no501_b23.g1 CHROMAT_FILE:
MSMg01no501_b23.g1 PHD_FILE: MSMg01no501_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:54 2005
(562 letters)
>mm_chr5_76998545_76999506
Length = 962
Score = 1064 bits (550), Expect = 0.0
Identities = 559/562 (99%)
Strand = Plus / Plus
Query: 1 actattcaggacattctggattattgctccagcatcgcacagtcccactaagccctagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actattcaggacattctggattattgctccagcatcgcacagtcccactaagccctagga 260
Query: 61 aagaggagaaagaagtgagcatgcattctcagtccagcaaacactacagaaagagtgagc 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aagaggagaaagaagtgagcatgcattctcagtccagcaaacactacggaaagagtgagc 320
Query: 121 aagtgctctgaggagccagattcaagcgtttctgttactaaacatctgtgactgtgcagt 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 aagtgctctgaggagccagattcaagcgtttctgttactaaacgtctgtgactgtgcagt 380
Query: 181 actctgctccagagatctaagagcagagcagcagcctgcggctcggttttatttgacatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctgctccagagatctaagagcagagcagcagcctgcggctcggttttatttgacatc 440
Query: 241 caggtgatgcacttaagcatttatctcatcatgaaaagccttcagcactttccagggacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtgatgcacttaagcatttatctcatcatgaaaagccttcagcactttccagggacc 500
Query: 301 gggcaggacattttgctttactgccagcttcttgtgttttcgagcggctgtcctcagtgg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcaggacattttgctttactgccagcttcttgtgttttcgagcggctgtcctcagtgg 560
Query: 361 aacagtgggagttcctcagcactcactatgtgccagttgctcacaaatcatggaacttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacagtgggagttcctcagcactcactatgtgccagttgctcacaaatcatggaacttgg 620
Query: 421 aaagcattgcacagaattgttttgtccccttgtctaacaagtgtgcatatggatgggcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagcattgcacagaattgttttgtccccttgtctaacaagtgtgcatatggatgggcag 680
Query: 481 gggatctgatgtggtaatcagccaccagcctggattgtaaggattatgtgactctgtata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggatctgatgtggtaatcagccaccagcctggattgtaaggattatgtgactctgtata 740
Query: 541 ttaaataaaggacattattaaa 562
||||||||||||||||||||||
Sbjct: 741 ttaaataaaggacattattaaa 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
