Query= MSMg01no501_d04.b1 MSMg01no501_d04.b1 CHROMAT_FILE:
MSMg01no501_d04.b1 PHD_FILE: MSMg01no501_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:59 2005
(654 letters)
>mm_chr5_62288306_62289359
Length = 1054
Score = 1187 bits (614), Expect = 0.0
Identities = 626/630 (99%)
Strand = Plus / Plus
Query: 25 gaattcatttatatttcttattattctcatttttctagcagaaataattccagcatcctc 84
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gaattcatttatagttgttattattctcatttttctagcagaaataattccagcatcctc 284
Query: 85 cttgtaaaattactataataatgcagaattaatataggcaacaaacataaactgtgctta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cttgtaaaattactataataatgcagaattaatataggcaacaaacataaactgtgctta 344
Query: 145 taaaacagaaacttttatgcacatatttaatgctcctttttattatataaattcagataa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 taaaacagaaacttttatgcacatatttaatgctcctttttattatataaattcagataa 404
Query: 205 atacaacatacagtctataattccattacttaattttcttctaaatttagatgttttata 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atacaacatacagtctataattccattacttaattttcttctaaatttagatgttttata 464
Query: 265 aaccatatattatgatgttttcaatattcttgatacttataaattacttcacatgttttt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaccatatattatgatgttttcaatattcttgatacttataaattacttcacatgttttt 524
Query: 325 aactatatactgaactacaaacaagtcatggtattctactagggagttactgacaaaagc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aactatatactgaactacaaacaagtcatggtattctactagggagttactgacaaaagc 584
Query: 385 ttgcagaaaatcttatggaaactttataagaagtattgtgagaactacaaaaactattaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttgcagaaaatcttatggaaactttataagaagtattgtgagaactacaaaaactattaa 644
Query: 445 taacagtaggataagaggacattgttggcaatgatgcccaggaatgattcattgcttaac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 taacagtaggataagaggacattgttggcaatgatgcccaggaatgattcattgcttaac 704
Query: 505 aaaacatttaaaaattgtataagataattatatgatttccttgtacccactttcctctct 564
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aaaacatttaaaaattgtacaagataattatatgatttccttgtacccactttcctctct 764
Query: 565 gaccagaagacctccagcatttctgactattactttaaagtgttcagttgtcttccccag 624
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 765 gaccagaagacctccagcatttctgactattactttaaagtgttcagttgacttccccag 824
Query: 625 actccttcctgaaaatgttctaaaatgttt 654
||||||||||||||||||||||||||||||
Sbjct: 825 actccttcctgaaaatgttctaaaatgttt 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_d04.g1 MSMg01no501_d04.g1 CHROMAT_FILE:
MSMg01no501_d04.g1 PHD_FILE: MSMg01no501_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:00 2005
(633 letters)
>mm_chr5_62502054_62503085
Length = 1032
Score = 1160 bits (600), Expect = 0.0
Identities = 617/623 (99%), Gaps = 1/623 (0%)
Strand = Plus / Minus
Query: 11 cccccaacatcctttgttcaagtgattggagtcctgacacacagtttgtccttgttggat 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 cccccaacatcctttgttcaagtgattggagtcctgacacacagtttgtccttgttggat 773
Query: 71 gaaaggaaatagtagagagaggatgagctaataactgtaaagtcagtattgaatcaaaat 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gaaaggaaatagtagagagaggatgagctaataactgtaaagtcagtattgaatcaaaat 713
Query: 131 tatattgaaatcctgagagaaattaagatatgtgcttcgatcattaacatttgtcactac 190
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tatattgaaatcctgaaagaaattaagatatgtgcttcgatcattaacatttgtcactac 653
Query: 191 tgagatttgctggtagatgagctgtcaatgaaccaacagaaacaggttttataagaagca 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgagatttgctggtagatgagctgtcaatgaaccaacagaaacaggttttataagaagca 593
Query: 251 actagacttgtcaaaaaaagtactttatgcccaaaggcatctgtataaatagaacttata 310
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 actagacttgtc-aaaaaagtactttatgcccaaaggcatctgtataaatagaacttata 534
Query: 311 aagtaaaagtgacaataaagtttgtagatcaggacagatagagtttaacttaattccaaa 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aagtaaaagtgacaataaagtttgtagatcaggacagatagagtttaacttaattccaaa 474
Query: 371 atagacaggctctctatttctctcttagtgccttgagttccttataatgacatttatata 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atagacaggctctctatttctctcttagtgccttgagttccttataatgacatttatata 414
Query: 431 tgacaggagtctctgagttttctttccttaaggagtaaatgtgaagggaaagcaatatta 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgacaggagtctctgagttttctttccttaaggagtaaatgtgaagggaaagcaatatta 354
Query: 491 tgtttatcctagctgtccagtttaatatcgttttatagatatttccatggtttactttca 550
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgtttatccaagctgtccagtttaatatcgttttatagatatttccatggtttactttca 294
Query: 551 tcaagtgtttactgtgtatgggttacatataatgtaaatccacaaactttccatgagttt 610
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 293 tcaagtgtttactgtgtatgggttacatataatataaattcacaaactttccatgagttt 234
Query: 611 catttttattnaaagtcctaaag 633
|||||||||| ||||||||||||
Sbjct: 233 catttttattaaaagtcctaaag 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1032
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1022
Effective search space: 636706
Effective search space used: 636706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
