Query= MSMg01no501_e04.b1 MSMg01no501_e04.b1 CHROMAT_FILE:
MSMg01no501_e04.b1 PHD_FILE: MSMg01no501_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:04 2005
(647 letters)
>mm_chr5_149621998_149623036
Length = 1039
Score = 1081 bits (559), Expect = 0.0
Identities = 617/645 (95%), Gaps = 16/645 (2%)
Strand = Plus / Minus
Query: 7 gaattcctccccttttc----ctggtactccagagagttgtaaccttcaaattcctgtag 62
|||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaattcctcccc----ctaggctggtactccagagagttgtaaccttcaaattcctgtag 702
Query: 63 catggctccctccccaaattccccatcctattagttcaggagtcaaagccttacttaagg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 catggctccctccccaaattccccatcctattagttcaggagtcaaagccttacttaagg 642
Query: 123 tatttttattaaatgtatccttattaaatgtagccttatttaatgtatctttatttgatg 182
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 641 tatttttattaaatgtatccttattaaatgtattcttatttaatgtatccttatttgatg 582
Query: 183 tatcctggggcctaagagcccctccttttctgaccttgggctcagccatgcagccgactt 242
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tatcctggagcctaagagcccctccttttctgaccttgggctcagccatgcagccgactt 522
Query: 243 ttaagcccaaggatgaactgagggcacccggacaggcagcttccagccaccggccaggga 302
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 521 ttaagcccaaggatgaactgagggcacccggacaggcagcttccagccactggccaggga 462
Query: 303 agtcgggtgctgagtgcctcctgcaaatctgtagttctctgatcagccctaaatacttga 362
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agtcaggtgctgagtgcctcctgcaaatctgtagttctctgatcagccctaaatacttga 402
Query: 363 atgggcaccggggttccggtgtcatgctgacttgccatgctggttcggtgtgtttcccac 422
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 401 atgggcaccggggttctggtgtcatgctgacttgccatgctggtttggtgtgtttcccac 342
Query: 423 cagctggattcatcttgtcccttgctcactagcttgctgtgttggtcagttttctgtcgc 482
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 341 cagctggattcatcttgtccctt--------gcttgctgtgttggtcagttttctgtcgc 290
Query: 483 tgacaaaacactgagaaagtcagctgatacagaaggaaaggtttgcgagagcttgtgccc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgacaaaacactgagaaagtcagctgatacagaaggaaaggtttgcgagagcttgtgccc 230
Query: 543 atttggtccttgtcccgctttgctttctgttgctgagataaacacagggtccgaaagcaa 602
|||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 229 atttggtccttgtcccactttgctttctgttgctgagataaacacaggggccggaagcaa 170
Query: 603 cttgtgggaaggaagtcatttatttcttttgcaagctacactcgg 647
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 cttgggggaaggaagtcatttatttcttttgcaagctacactcgg 125
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1039
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1029
Effective search space: 655473
Effective search space used: 655473
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_e04.g1 MSMg01no501_e04.g1 CHROMAT_FILE:
MSMg01no501_e04.g1 PHD_FILE: MSMg01no501_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:04 2005
(634 letters)
>mm_chr5_149457453_149458486
Length = 1034
Score = 1156 bits (598), Expect = 0.0
Identities = 625/634 (98%)
Strand = Plus / Plus
Query: 1 ttctcaatgtccttagtcacctttaatgacatttccagtgcccttcaactctatgaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcaatgtccttagtcacctttaatgacatttccagtgcccttcaactctatgaagga 260
Query: 61 gtagattgaagcccaccttcagttgctgtaataaatcaccacagactggaagttttaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gtagattgaagcccaccttcagttgctgtaataaatcaccacagactggaaattttaaaa 320
Query: 121 caaatggagactcactcatttcttagagttctggaagttgggaagcccaagactcagagg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 caaatggagactcactcatttcttagagttctggaagttgggaaacccaagactcagagg 380
Query: 181 ccactccttgtgagtgacaacatcttgctgtacccccctatgaaggaagacgtaacttgg 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccactccttgtgagtgacaacattttgctgtacccccctatgaaggaagacgtaacttgg 440
Query: 241 tgagacatggcaaacatgcccgctccagtcctcttcctaaagccattgatcccatcaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagacatggcaaacatgcccgctccagtcctcttcctaaagccattgatcccatcaagg 500
Query: 301 ggccccacccttgtggcttcctctagttctaattacttaaagttttaacccccaaatacc 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccccacccttgtggcttcgtctagttctaattacttaaagttttaacccccaaatacc 560
Query: 361 atcaacataggaattttgagattaagcttctaacacgtgaatttaggataatgcattcta 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 atcaacataggaattttgagattaagcttctaacacgtgaatttaggataatacattcta 620
Query: 421 accacagcaggttcaatcctgccccacagggtgaaaaatctgtggatgtctaacacctgg 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 accacagcaggttcaatcctgccccacagggtgaaaaatctgtggatgtccaacacctgg 680
Query: 481 acaacactgggaaacccactgcatcttctccgaagtaaaatctggtaaattccgtcaccc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 acaacactgggaaacccactgcatcttctccgaagtaaaatctggtaaattctgtcaccc 740
Query: 541 cggtgtagctcctgatcccccagcggaagacctcttggtctccgttcacattgattctgt 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 cggtgtagctcctgatcccccagcggaagacctcttggtctccgttcacattgattttgt 800
Query: 601 gcaagccccgctaaggggctgcatgtctacatag 634
||||| ||||||||||||||||||||||||||||
Sbjct: 801 gcaagtcccgctaaggggctgcatgtctacatag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
