Query= MSMg01no501_e14.b1 MSMg01no501_e14.b1 CHROMAT_FILE:
MSMg01no501_e14.b1 PHD_FILE: MSMg01no501_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:06 2005
(608 letters)
>mm_chr5_82840264_82841271
Length = 1008
Score = 1054 bits (545), Expect = 0.0
Identities = 594/613 (96%), Gaps = 5/613 (0%)
Strand = Plus / Plus
Query: 1 ataccgaatggctgagaagcacctgaaaaaaatgttcaacatccttaatcatcagggaac 60
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 196 ataccgaatggcagagaagcacctgaaaaaaatgttcagcatccttaatcatcagggaaa 255
Query: 61 tgcaaatcaaaacaaccctgtgattccacctcacaccagttagaatggctaagatcaaaa 120
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 256 tgcaaatcaaaacaaccctgggattccacctcacaccagtcagaatggctaagatcaaaa 315
Query: 121 attcaggtgacggcagatgctggggaggatgtggagaaagaggaacactccttcattgtt 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 attcaggtgacagcagatgctggggaggatgtggagaaagaggaacactccttcattgtt 375
Query: 181 ggtgggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcagaaaat 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 376 ggtgggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctcagaaaat 435
Query: 241 tggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tggacatagtactactggaggatccagcaatacctctcctgggcatatatccagaagatg 495
Query: 301 tcccaaccggtaagaaagctttttttttttttt-----aatcttacattgttttatatat 355
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 496 tcccaaccggtaagaaagctttttttttttttttttttaatcttacattgttttatatat 555
Query: 356 gagtttgcttttattgttgaggacattaagttttagcaacataatgtggttgttagtgga 415
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gagtttgcttttattgttgagaacattaagttttagcaacataatgtggttgttagtgga 615
Query: 416 tgtctaaatgtgttagttcaacaaaaataagtatctattctggtaaaatagcttgcagtt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtctaaatgtgttagttcaacaaaaataagtatctattctggtaaaatagcttgcagtt 675
Query: 476 atctgttactcaaataatagaaaatgatgtattttagacagcattttgaattaaagtgag 535
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 676 aactgttactcaaataatagaaaatgatgtattttagacagcatttggaattaaagtgag 735
Query: 536 atcttgtaatagaatcattcttgactggttatgctcgttatggacatttaacgtattcag 595
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 736 atcttgtaatagaatcattcttgactggttatgctcgttatggaaatataacgtattcag 795
Query: 596 aaaggaaacaata 608
|||||||| ||||
Sbjct: 796 aaaggaaataata 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_e14.g1 MSMg01no501_e14.g1 CHROMAT_FILE:
MSMg01no501_e14.g1 PHD_FILE: MSMg01no501_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:06 2005
(559 letters)
>mm_chr5_82978043_82979001
Length = 959
Score = 816 bits (422), Expect = 0.0
Identities = 449/464 (96%), Gaps = 10/464 (2%)
Strand = Plus / Minus
Query: 1 ctaaaataatgaggtaagtagagaaaaaaataactgttcgtgttaataattgtagataaa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctaaaatagtgaggtaagtagagaaaaaaataactgttcgtgttaataattgtagataaa 405
Query: 61 tcagtcactgtcagcacagtagtggagattagaactttgtcagcaagattttgtactggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 404 tcagtcactgtcagcacagtagtggagattagaactttgtcagcaagattttgtattggg 345
Query: 121 ttttggaagggtttgaggagaatgatcagaatggagtgggaagtttgcagtcatacattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttttggaagggtttgaggagaatgatcagaatggagtgggaagtttgcagtcatacattt 285
Query: 181 ccttcatggaaatatcaaactgttttccaaatgaaaagtttgaaatactttttagtttca 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccttcatggaaatatcaaactgtcttccaaatgaaaagtttgaaatactttttagtttca 225
Query: 241 gtatgactttattactctaagcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 224 gtatgactttattactctaagcactgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 165
Query: 301 tgtgtg----------cttgtgcccaattgctttgatgaatgcatttagtttagtattca 350
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tgtgtgtgtgtgtgtgcttgtgcccaattgctttgatgaatgcatttagtttagtattca 105
Query: 351 gataaacaaaatttgaccttcatatcccttccatacatactccaggctgctgaagttgag 410
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gataaacaaaatttgacctttatatcccttccatacatactccaggctgctgaagttgag 45
Query: 411 actgatatttctgcttcctctccccatctctgcttttattttca 454
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 actgatatttctgcttcctctccccatctctgcttttattttca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
