BAC Information

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BAC

Clone NameMSMg01-501E24
Chromosome5 (Build37)
Map Location 90,512,284 - 90,661,563
singlet/doubletdoublet
Overlap geneEG665733, Cox18, Ankrd17
Upstream geneSlc4a4, Gc, LOC622870, Npffr2, LOC631105, Adamts3
Downstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501E24.T7 (MSMg01no501_e24.b1)MSMg01-501E24.TJ (MSMg01no501_e24.g1)
ACCAG576939AG576940
length729716
length of high quality
(start - end)
561 (36 - 596)512 (60 - 571)
definitionCHROMAT_FILE: MSMg01no501_e24.b1 PHD_FILE: MSMg01no501_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:07 2005CHROMAT_FILE: MSMg01no501_e24.g1 PHD_FILE: MSMg01no501_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,512,284 - 90,512,841)(90,661,052 - 90,661,563)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGCC
TCTCTTCTGACCTCCAGGGTGCCAGGAACATAAACGGTGCACATACTTAC
ATGCAGGCAAAAATACTGACTGGCATAAAAATAAAAATAAATAAATTTTT
AAAATAAGCTAGTTAGTACTGCAGAGATGGCTCAGCAATTAAGAGCATTG
ACTGCTCTTCCAAATGTCCTGAGTTCAAATCCCAGCAACTACATGGAGGC
TCACAACCATCCGTAATAAGATCTGGTGCCCTCTCTGGAGTGTCTGAAGA
CAGCTACAGTGTACTTACATGTAACAATAATTTTTAAAAAAAAATAAGCA
AGTTATACCCAAACCATAGATTTATAAAATAGATTAAACAAAATTAATAT
TACATAAATCTGCCACTTCTTGTTTTCTAGATTGAAGACAACAAGAAGTG
CTAGCTCTAAAGGTTGGTCCTAACAAGGGATTCTAGTAATACAGTACAAA
TGGTAATGTTAGGTTCAAAAGCAACCAGATCCAGTTGTTGTCATTTATGA
CCAGAATTCCTTCTTTGCAAATGGACATAGAATATTTATAAGTACTAGCT
ATAATTCAAAAGGTAAAAATTACACAGATCTTATTATGTAACCACATTAT
TTAAAAGTAACAAGTTAGGAAATGAGTAGAGATAACCTTGAAAACATTTG
ACCGACTCCTGAGGATCAAGGAGTTAGTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACAATTTGGTATAAGTTAAAATAGGAATTAAAAAGCCTTTT
TTAAATTTTCTTTTTTTTAAAGCTGTGTCTTGATTTTGAATGTTACCAAC
GTTTGTTTCCGACTTTCTTTTCTCTCAGACAAAGTGGACTGGTGTAACCC
TGGGATGGGAAATCCCATGATTCACAGGCCAATGTCTGACCCAGGAGTGT
TTTCACAGCATCAAGCAATGGAGCGAGATAGTACAGGGATTGTAACCCCT
TCTGGTACATTCCATCAGCATGTTCCTGCAGGATACATGGACTTTCCTAA
AGTTGGGGTAATTTAAATACATATTTTCATTATTACAAAAGATCTTTTTG
TTTGTCTGATTGTTTGTGCTTGTTTATCCCTAGTCATCTTTCATTTCCAA
GTGCATAAGCTGTGAAGTCTGGAGCTTGGCAGGTCAGACTGGCTAGGATA
GTCTTTCTAGCCATTTAGGGGACTCCTATTTCAGCAGTTGTTTGTTGGTT
TGTTTGGTTGGGGTATGTTGTTTTATTTTAGGCCTTATCCCAAAAGAACT
CACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAA
TACCCGAGATATAAAATACCATTTGCAAACAAATTAAACTCAAGAAGAAT
GAAGACCAAATTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_e24.b1 MSMg01no501_e24.b1 CHROMAT_FILE:
MSMg01no501_e24.b1 PHD_FILE: MSMg01no501_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:07 2005
         (561 letters)



>mm_chr5_90512081_90513041
          Length = 961

 Score = 1048 bits (542), Expect = 0.0
 Identities = 554/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggcctctcttctgacctccagggtgccaggaacataaacggtgcacatactt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggcctctcttctgacctccagggtgccaggaacataaacggtgcacatactt 263

                                                                       
Query: 64  acatgcaggcaaaaatactgactggcataaaaataaaaataaataaatttttaaaataag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acatgcaggcaaaaatactgactggcataaaaataaaaataaataaatttttaaaataag 323

                                                                       
Query: 124 ctagttagtactgcagagatggctcagcaattaagagcattgactgctcttccaaatgtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctagttagtactgcagagatggctcagcaattaagagcattgactgctcttccaaatgtc 383

                                                                       
Query: 184 ctgagttcaaatcccagcaactacatggaggctcacaaccatccgtaataagatctggtg 243
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgagttcaaatcccagcaaccacatggaggctcacaaccatccgtaataagatctggtg 443

                                                                       
Query: 244 ccctctctggagtgtctgaagacagctacagtgtacttacatgtaacaataatttttaaa 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 444 ccctctctggagtgtctgaagacagctacagtgtacttacatgtaacaataattttttta 503

                                                                       
Query: 304 aaaaaataagcaagttatacccaaaccatagatttataaaatagattaaacaaaattaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaaaataagcaagttatacccaaaccatagatttataaaatagattaaacaaaattaat 563

                                                                       
Query: 364 attacataaatctgccacttcttgttttctagattgaagacaacaagaagtgctagctct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attacataaatctgccacttcttgttttctagattgaagacaacaagaagtgctagctct 623

                                                                       
Query: 424 aaaggttggtcctaacaagggattctagtaatacagtacaaatggtaatgttaggttcaa 483
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaggctggtcctaacaagggattctagtaatacagtacaaatggtaatgttaggttcaa 683

                                                                       
Query: 484 aagcaaccagatccagttgttgtcatttatgaccagaattccttctttgcaaatggacat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagcaaccagatccagttgttgtcatttatgaccagaattccttctttgcaaatggacat 743

                             
Query: 544 agaatatttataagtact 561
           ||||||||||||||||||
Sbjct: 744 agaatatttataagtact 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no501_e24.g1 MSMg01no501_e24.g1 CHROMAT_FILE:
MSMg01no501_e24.g1 PHD_FILE: MSMg01no501_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:08 2005
         (512 letters)



>mm_chr5_90660852_90661763
          Length = 912

 Score =  990 bits (512), Expect = 0.0
 Identities = 512/512 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaatttggtataagttaaaataggaattaaaaagccttttttaaattttctttttttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 acaatttggtataagttaaaataggaattaaaaagccttttttaaattttctttttttta 653

                                                                       
Query: 61  aagctgtgtcttgattttgaatgttaccaacgtttgtttccgactttcttttctctcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aagctgtgtcttgattttgaatgttaccaacgtttgtttccgactttcttttctctcaga 593

                                                                       
Query: 121 caaagtggactggtgtaaccctgggatgggaaatcccatgattcacaggccaatgtctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 caaagtggactggtgtaaccctgggatgggaaatcccatgattcacaggccaatgtctga 533

                                                                       
Query: 181 cccaggagtgttttcacagcatcaagcaatggagcgagatagtacagggattgtaacccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cccaggagtgttttcacagcatcaagcaatggagcgagatagtacagggattgtaacccc 473

                                                                       
Query: 241 ttctggtacattccatcagcatgttcctgcaggatacatggactttcctaaagttggggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttctggtacattccatcagcatgttcctgcaggatacatggactttcctaaagttggggt 413

                                                                       
Query: 301 aatttaaatacatattttcattattacaaaagatctttttgtttgtctgattgtttgtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aatttaaatacatattttcattattacaaaagatctttttgtttgtctgattgtttgtgc 353

                                                                       
Query: 361 ttgtttatccctagtcatctttcatttccaagtgcataagctgtgaagtctggagcttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgtttatccctagtcatctttcatttccaagtgcataagctgtgaagtctggagcttgg 293

                                                                       
Query: 421 caggtcagactggctaggatagtctttctagccatttaggggactcctatttcagcagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 caggtcagactggctaggatagtctttctagccatttaggggactcctatttcagcagtt 233

                                           
Query: 481 gtttgttggtttgtttggttggggtatgttgt 512
           ||||||||||||||||||||||||||||||||
Sbjct: 232 gtttgttggtttgtttggttggggtatgttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)