Query= MSMg01no501_f06.b1 MSMg01no501_f06.b1 CHROMAT_FILE:
MSMg01no501_f06.b1 PHD_FILE: MSMg01no501_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:09 2005
(294 letters)
>mm_chr5_138672620_138673311
Length = 692
Score = 404 bits (209), Expect = e-117
Identities = 264/297 (88%), Gaps = 26/297 (8%)
Strand = Plus / Minus
Query: 1 gttcgcccttgtcatctcaaatagctcccagtctactttcctctgtgtgtgtgt---gtg 57
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttcgcccttgtcatctcaaatagctcccagtctactttcctctgtgtgtgtgtaca--- 504
Query: 58 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtccatgtcctaattggtttaattaaggtggct 117
|||||||||||||||||||||||||||||||||||||||| |
Sbjct: 503 ------------------tgtgtgtgtgtccatgtcctaattggtttaattaaggtgg-t 463
Query: 118 cacaagttcataggtaccttgccagtaaccacagcactgacaaaagcctccccctctttc 177
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cacaagttcataggtaccttaccagtaaccacagcactgacaaaagcctccccctctttc 403
Query: 178 cacagtgtccattgtacatttagggggaaaggcctctgagccactctgtagtaattactt 237
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 402 cacagtggccattgtagattta-ggggaaaggcctctgagccactctgtagtaattactt 344
Query: 238 ccttgtttggttctttttttttgaggtggcctttgaggaaggtcttactgcactatt 294
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcttgtttgcttccttttgtttgaggtggcctttgaggaaggtcttactgcactatt 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 692
Length adjustment: 9
Effective length of query: 285
Effective length of database: 683
Effective search space: 194655
Effective search space used: 194655
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no501_f06.g1 MSMg01no501_f06.g1 CHROMAT_FILE:
MSMg01no501_f06.g1 PHD_FILE: MSMg01no501_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:09 2005
(343 letters)
>mm_chr5_138417332_138418074
Length = 743
Score = 551 bits (285), Expect = e-161
Identities = 294/297 (98%)
Strand = Plus / Plus
Query: 1 cagtcatcaggctcggcagcctttccaactgaacactctcaccggcccacagttggagga 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 cagtcatcaggctcggcagcctttccaactgaacactctcaccagcccacagttggagga 260
Query: 61 ttcttaggggttgtctctacctacagttcagttgttatactgagataattccagagtgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttaggggttgtctctacctacagttcagttgttatactgagataattccagagtgat 320
Query: 121 tggagtcagacaggagctgcagctgaagctcccacacaggccagctagcctgggaggtgc 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagtcagacaggagctgcagcagaagctcccacacaggccagctagcctgggaggtgc 380
Query: 181 actggagagcaagagagactatttcaaaaaaggtggaaaccaagaaccaacactcaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actggagagcaagagagactatttcaaaaaaggtggaaaccaagaaccaacactcaagat 440
Query: 241 tgtcctcttatatctacacacaagtggtggcatgctcgcacatgcaacacacacaca 297
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcctctaatatctacacacaagtggtggcatgctcgcacatgcaacacacacaca 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
