BAC Information

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BAC

Clone NameMSMg01-501F18
Chromosome5 (Build37)
Map Location 24,488,820 - 24,659,933
singlet/doubletdoublet
Overlap genePrkag2
Upstream geneDrctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb
Downstream geneGalntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501F18.T7 (MSMg01no501_f18.b1)MSMg01-501F18.TJ (MSMg01no501_f18.g1)
ACCAG576974AG576975
length686675
length of high quality
(start - end)		612 (36 - 647)509 (56 - 564)
definitionCHROMAT_FILE: MSMg01no501_f18.b1 PHD_FILE: MSMg01no501_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:11 2005CHROMAT_FILE: MSMg01no501_f18.g1 PHD_FILE: MSMg01no501_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,659,535 - 24,659,933)(24,488,820 - 24,489,328)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCAG
CTATTTTGTTCAATATTAACAAACCCATGGAAAAGCCTTGATTTGCCTGG
AAGAATTGTATCCTGTAAAATACTTATCTTCTTTCCTTTTTAAAAGATTT
TCTTTTTATTTATGTGTATGTACCTCTGTATGAGGATGGGCATGTGTGAG
GGTAACTGAAGGCCAGAAGATATTGTCTGATATCCCTGACATAGGTGCTG
GGACCCTAACTCTGGTCTTCAGGAAGAGTAGCAAATGTTCTTAACTATTA
AGACATCTCTCCGGCTTCCCTTCCCACTTTGAAGACAGGGACCCACATAG
CACAGGCTAGCTTAACTCACTATGTAGCCAAGGATGACCTTGACCTTCTG
TTCATGTTTCCACCTCCAGAGTGCTGAGATGACATCACACACCACTCTGC
TCAGTTTATATAACGATGGGGAATTGACCTCAGGATACTGTGTATTCTGG
GCACTCAGTCTACTGACTGAGACACACCCCCAGCCAAAGCCTAATGGTCA
TGAAAGCAAACTGAAAATGTGCTTTGCTACTTTGTGGAGTCTTCTTTTTC
TTGCCCTTTATCCTCTTGGCTTTACCCCTAACCCCAGATGGATAAAGGNA
TGGGGGTGAGGGGGGTAGATCCCCTGAATCAAATTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCTGTTTCTGCTTTCCCATAAGTGTGTAGCAACATGCCCTCCCA
GCTCTTTAAACTGGGGATGGGGATTGAACTTGAGTCCTCACACTTGCACA
GTTATCAGCCTCCTAACTGAGCCCGTTCCCTAGCTGGAGTCAGCCTTTAT
GACTCGAGTTACATTTGCTCACCTGAACTCAATCTGATGCCAGATCGTTC
CTGTTTGTTTCACTTCTGGAAACTACAAGATGCACTTCTCTGAACTACAT
ACTGTCCCAGGGCTCTGATGGCTGCTTGACCCTGCTGTCCCTTACAGCAC
CCGTGGGCCAGCTGCTTAGAACCTGTGGACTGGGAAGCTTGCGGGCCCTT
GATGATTGGGGTTGGTCCTTGCCCGATGGTGCCTGTGAGTTGCACATCTT
CCTTCCTGGGAACTGTCCTGGGCTCCTTTTCTCTAAGGACCTTCTCTATG
GTGTCCCCTGTACTGTAGAGCCTGCATGAGCTTGGGTGTGTGCCTGGCTT
ACTGACTCACACTTANGTGCTAGGGTCTTGAANGAGACAGTGTGACAGAG
GGTTGCATGGGACTGCAAAGCAGAGCAGCTTGGACATCGGCTTTTCACAC
CAGACTGTAGGGGGTGTTATGTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_f18.b1 MSMg01no501_f18.b1 CHROMAT_FILE:
MSMg01no501_f18.b1 PHD_FILE: MSMg01no501_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:11 2005
         (612 letters)



>mm_chr5_24659535_24660546
          Length = 1012

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccagctattttgttcaatattaacaaacccatggaaaagccttgatttgcctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaattctccagctattttgttcaatattaacaaacccatggaaaagccttgatttgcctg 340

                                                                       
Query: 65  gaagaattgtatcctgtaaaatacttatcttctttcctttttaaaagattttctttttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaagaattgtatcctgtaaaatacttatcttctttcctttttaaaagattttctttttat 280

                                                                       
Query: 125 ttatgtgtatgtacctctgtatgaggatgggcatgtgtgagggtaactgaaggccagaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttatgtgtatgtacctctgtatgaggatgggcatgtgtgagggtaactgaaggccagaag 220

                                                                       
Query: 185 atattgtctgatatccctgacataggtgctgggaccctaactctggtcttcaggaagagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 atattgtctgatatccctgacataggtgctgggaccctaactctggtcttcaggaagagt 160

                                                                       
Query: 245 agcaaatgttcttaactattaagacatctctccggcttcccttcccactttgaagacagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 agcaaatgttcttaactattaagacatctctccggcttcccttcccactttgaagacagg 100

                                                                       
Query: 305 gacccacatagcacaggctagcttaactcactatgtagccaaggatgaccttgaccttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  gacccacatagcacaggctagcttaactcactatgtagccaaggatgaccttgaccttct 40

                                                  
Query: 365 gttcatgtttccacctccagagtgctgagatgacatcac 403
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  gttcatgtttccacctccagagtgctgagatgacatcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_f18.g1 MSMg01no501_f18.g1 CHROMAT_FILE:
MSMg01no501_f18.g1 PHD_FILE: MSMg01no501_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:11 2005
         (509 letters)



>mm_chr5_24488620_24489528
          Length = 909

 Score =  884 bits (457), Expect = 0.0
 Identities = 496/509 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgtttctgctttcccataagtgtgtagcaacatgccctcccagctctttaaactggg 60
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 201 tcctgtttctgctttcccataagtgtgtagcaacacgctctcccagctctttaaactggg 260

                                                                       
Query: 61  gatggggattgaacttgagtcctcacacttgcacagttatcagcctcctaactgagcccg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gatggggattgaacttgagtcctcacacttgcacagttagcagcctcctaactgagcccg 320

                                                                       
Query: 121 ttccctagctggagtcagcctttatgactcgagttacatttgctcacctgaactcaatct 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccctagctggagtcagtctttatgactcgagttacatttgctcacctgaactcaatct 380

                                                                       
Query: 181 gatgccagatcgttcctgtttgtttcacttctggaaactacaagatgcacttctctgaac 240
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgttagatcgttcctgtttgtttcacttctggaaactacaagatgcacttctctgaac 440

                                                                       
Query: 241 tacatactgtcccagggctctgatggctgcttgaccctgctgtcccttacagcacccgtg 300
           |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 tacagactgacccagggctctgatggctgcttgaccctgctgtcccttacagcacctgtg 500

                                                                       
Query: 301 ggccagctgcttagaacctgtggactgggaagcttgcgggcccttgatgattggggttgg 360
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 501 ggccagctgcttagaacctgtggactgggaagcttgcaggcccttggtgattggggttgg 560

                                                                       
Query: 361 tccttgcccgatggtgcctgtgagttgcacatcttccttcctgggaactgtcctgggctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccttgcccgatggtgcctgtgagttgcacatcttccttcctgggaactgtcctgggctc 620

                                                                       
Query: 421 cttttctctaaggaccttctctatggtgtcccctgtactgtagagcctgcatgagcttgg 480
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 cttttctctaaggaccttttctatgatgtcccctgtactgtagagcctgcatgagcttgg 680

                                        
Query: 481 gtgtgtgcctggcttactgactcacactt 509
           |||||||||||||||||||||||||||||
Sbjct: 681 gtgtgtgcctggcttactgactcacactt 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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