Query= MSMg01no501_i12.b1 MSMg01no501_i12.b1 CHROMAT_FILE:
MSMg01no501_i12.b1 PHD_FILE: MSMg01no501_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:23 2005
(618 letters)
>mm_chr5_62371752_62372769
Length = 1018
Score = 1143 bits (591), Expect = 0.0
Identities = 609/615 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaggcagtttgctcaatatcagttatggcctatatttcccctgtaataatgcat 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ggaattcaggcagtaggttcaatatcagttatggcctatatttcccctgtaataatgcat 759
Query: 64 atcatttaaaggatttgttaattgtaggacattcagatataaactaataatatgtaagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 atcatttaaaggatttgttaattgtaggacattcagatataaactaataatatgtaagag 699
Query: 124 caaagaacacttaaatgaagaagtaaaagaaagcataaaagagctataatactaaagaaa 183
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 caaagaacatttaaatgaagaagtaaaagaaagcataaaagagctataatactaaagaaa 639
Query: 184 acattgcagcttctcgtaagacggttagatatttaagatgaacacagagaatattgatta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 acattgcagcttctcgtaagacggttagatatttaagatgaacacagagaatattgatta 579
Query: 244 taagccatttgatgcagatggaattagcatagactattttaaataaccatttgtccaggt 303
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 578 taagccatttgatgcagatgaaattagcatagactattttaaataaccatttgtccaggt 519
Query: 304 catactggataaagtacattgacctacaaaccagctctctaatggtataagattttggta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 catactggataaagtacattgacctacaaaccagctctctaatggtataagattttggta 459
Query: 364 catgctatttctggagaatatagctcatttaatgttctgattattttaggactacacaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 catgctatttctggagaatatagctcatttaatgttctgattattttaggactacacaat 399
Query: 424 aaatgtaatataaaagcaagtgttatctgaagaatgcaaactgctactttgtaagggaca 483
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaatgcaatataaaagcaagtgttatctgaagaatgcaaactgctactttgtaagggaca 339
Query: 484 tatcagtagctagaaataaactaaatgtacttttctcatcttattatttgatattttaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tatcagtagctagaaataaactaaatgtacttttctcatcttattatttgatattttaaa 279
Query: 544 actcacttcaaattatttgaattttcattctttctatccaatgtaataaaaacgttacag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 actcacttcaaattatttgaattttcattctttctatccaatgtaataaaaacgttacag 219
Query: 604 gttcatccctgatca 618
|||||||||||||||
Sbjct: 218 gttcatccctgatca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_i12.g1 MSMg01no501_i12.g1 CHROMAT_FILE:
MSMg01no501_i12.g1 PHD_FILE: MSMg01no501_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:23 2005
(575 letters)
>mm_chr5_62223444_62224418
Length = 975
Score = 1050 bits (543), Expect = 0.0
Identities = 567/579 (97%), Gaps = 8/579 (1%)
Strand = Plus / Plus
Query: 1 aaaggaattgaaggaggaaaactgtaaaaagatatattgtatgagaaaggaatatatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaggaattgaaggaggaaaactgtaaaaagatatattgtatgagaaaggaatatatttt 260
Query: 61 aataaaatacatgatatggaaagagtggatggtattgattaccaagacataaattaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaaatacatgatatggaaagagtggatggtattgattaccaagacataaattaaaaa 320
Query: 121 taatttactcaggcaatcctttacagtttaaatacaaacaatggtatttggatatccctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatttactcaggcaatcctttacagtttaaatacaaacaatggtatttggatatccctc 380
Query: 181 agtaatgattagagaattaatagaaaaaaatgtactgagcacacaaaacttgccccaaat 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 agtaatgattagagaattaatagaaaaaaaggtactgagcacacaaaacttgccccaaat 440
Query: 241 tctatgg----tttttgcccaagttaaaaaaaaaaaataataaccaaacttaaagttgaa 296
||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctatggcaagt----gcccaagttaaaaaaaaaaaataataaccaaacttaaagttgaa 496
Query: 297 taatgtgaaagtgaattagtatttctgaatttaaccaagtatttttctagttttttatat 356
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taatgtgaaagtgaatcagtatttctgaatttaaccaagtatttttctagttttttatat 556
Query: 357 ttctatctaggtttgcttatacattgaactaccaatgtgactacctaccaaaatggaaaa 416
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 557 ttctatctaggtttgcttatacattgaactaccaatgtgactgcctaccaaaatggaaaa 616
Query: 417 ttagcctggttcattgaatcactaggataatcttgttgatatatttctaataatgtatct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttagcctggttcattgaatcactaggataatcttgttgatatatttctaataatgtatct 676
Query: 477 gtgagcagatacattgactaatgctcaatgtacaacactagaaaaatgatcatttttaca 536
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 677 gtgagcagatacattgactaatgctcaatgtacaacactagaaaaatgatcagttttaca 736
Query: 537 atgtgggtttagtggactaaatgaaagattttttattaa 575
|||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atgtgggtttagtggactaaatgaaagattttttattaa 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
