Query= MSMg01no501_i20.b1 MSMg01no501_i20.b1 CHROMAT_FILE:
MSMg01no501_i20.b1 PHD_FILE: MSMg01no501_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:24 2005
(614 letters)
>mm_chr5_150038939_150039952
Length = 1014
Score = 1106 bits (572), Expect = 0.0
Identities = 604/615 (98%), Gaps = 1/615 (0%)
Strand = Plus / Minus
Query: 1 ttaataatgattcataacaggagcaaaatgacaactatgaatgaaataatttcgtggttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 778 ttaataatgattcataacaggagcaaaatgacaactatgaatgaaataatttcatggttg 719
Query: 61 gtggtccctatgaggaactgtattaaagggtcacagcactaggaagagtgagacccactg 120
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 718 gtggtccccatgaagaactgtattaaagggtcacagcattaggaagagtgagacccactg 659
Query: 121 tcctatgttgacgtaaacactcccgagctatactgcaagagctctcactgctagccacat 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 658 tcctatgttgacgtaaacactcccgagctacactgcaagagctctcactgctagccacat 599
Query: 181 ctggcttctgagtacttgaaatgtgactaggacaactgagggatgagtgtcagagtaacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ctggcttctgagtacttgaaatgtgactaggacaactgagggatgagtgtcagagtaacg 539
Query: 241 ccaggcccttgattaacatggggtggagacggtactgtgcatgcatctagccccgagctc 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 538 ccaggcccttgattaacatggggtggagacggtactgtgcgtgcatctagccccgagctc 479
Query: 301 tatcctagcactaaacagaaacagcaggaacagggccttactggcctagaactcatggcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tatcctagcactaaacagaaacagcaggaacagggccttactggcctagaactcatggcc 419
Query: 361 cggctgcctcagccttctgagtgctgggattataggtgtgcgctgccgtgaccaaaaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 418 cggctgcctcagccttctgagtgctgggattataggtgtgcgctgccgtgaccaagaaag 359
Query: 421 actggatgtcagtgaatttagtcaaatgcagttttagtttttaaatataatgtctaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 actggatgtcagtgaatttagtcaaatgcagttttagtttttaaatataatgtctaattt 299
Query: 481 tattgcatttttattgacacatatgtgtgtacatgcaaccacatgcacgtggaggtcaga 540
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 298 tattgcatttttattgacacatatgtatgtacatgcaaccacatgcatgtggaggtcaga 239
Query: 541 gaaaacttttggaaactggttctcttctgcaccctta-gggtcccagacactgaactcan 599
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 238 gaaaacttttggaaactggttctcttctgcacccttaggggtcccagacactgaactcag 179
Query: 600 gtctgtaggctctgc 614
|||||||||||||||
Sbjct: 178 gtctgtaggctctgc 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_i20.g1 MSMg01no501_i20.g1 CHROMAT_FILE:
MSMg01no501_i20.g1 PHD_FILE: MSMg01no501_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:24 2005
(574 letters)
>mm_chr5_149901187_149902160
Length = 974
Score = 1064 bits (550), Expect = 0.0
Identities = 568/574 (98%)
Strand = Plus / Plus
Query: 1 acttaaacaaacacaaacaaaaccaaaccagagtaaactgtgccccagccacagtgactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttaaacaaacacaaacaaaaccaaaccagagtaaactgtgccccagccacagtgactg 260
Query: 61 ccttaagttgaattttaaatgcatctgccaataatctgaagtactcttgaggacttcatt 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gcttaagttgaattttaaatgcatctgccaataatctgaagtgctcttgaggacttcatt 320
Query: 121 gagacccaggaataagataaaggaatggatagctcaaggaccacaggctaagtggaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagacccaggaataagataaaggaatggatagctcaaggaccacaggctaagtggaaaat 380
Query: 181 caccagcaacataaacgctaagagtcttggccaagatactcacttgacgcaaaatacatg 240
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 381 caccagcaacataaacgctaagagtcttggccaagatactcacttgacacgaaatacatg 440
Query: 241 tatggaaacttgatctcagaggtattttggtatcccagcatttgcatggcttagaagttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatggaaacttgatctcagaggtattttggtatcccagcatttgcatggcttagaagttt 500
Query: 301 ctaacccagggctgaaaccatctgcaaatatcagatagttagagggcttgtcatggtctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaacccagggctgaaaccatctgcaaatatcagatagttagagggcttgtcatggtctc 560
Query: 361 caaaatgttcgcaagcccttgctttaaaggaaagccaaggttaaaatagagatgttttat 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaatgtttgcaagcccttgctttaaaggaaagccaaggttaaaatagagatgttttat 620
Query: 421 ggctagtaaagaaggttgaatgggcaaaagagcctgctgtgccgaccagaagacatgagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctagtaaagaaggttgaatgggcaaaagagcctgctgtgccgaccagaagacatgagt 680
Query: 481 ttgatccctggattccatggtggaaggagtaagaggtgaccctcaaaaactaacctctga 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggtccctggattccatggtggaaggagtaagaggtgaccctcaaaaactaacctctga 740
Query: 541 gttgtgccatggtggcgcatgcctttaatcccag 574
||||||||||||||||||||||||||||||||||
Sbjct: 741 gttgtgccatggtggcgcatgcctttaatcccag 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
