Query= MSMg01no501_n05.b1 MSMg01no501_n05.b1 CHROMAT_FILE:
MSMg01no501_n05.b1 PHD_FILE: MSMg01no501_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:43 2005
(417 letters)
>mm_chr5_97588107_97588926
Length = 820
Score = 561 bits (290), Expect = e-164
Identities = 369/420 (87%), Gaps = 39/420 (9%)
Strand = Plus / Minus
Query: 1 tggtggctcacacacagcttcccatggctccaactccagagagtgtggtgctcctctggg 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 735 tggtggctcacacacagcttcccatggctccaactccaaagagtgtggtgttcctctggg 676
Query: 61 cttctgcctgcacacacgcgcacacacacacacacacacacacacacacacacacacaca 120
|||||||||| ||||||||||||||
Sbjct: 675 cttctgcctg------------------------------------cacacacacacaca 652
Query: 121 cacacacacaatgtacatacacatgtacacattttaaaagttttgatttaagaa---aat 177
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 651 cacacacacaatgtacatacacgtgtacacattttaaaagttttgatttaagaaaagaag 592
Query: 178 aaattttgaaggcaggtaaacactgacaaaaattttcccaaaaacaatccatttgcaaat 237
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 591 aaattttgaaggcaggtaaacactgacaaaaattttcctgtaaacaatccatttgcaaat 532
Query: 238 gtatagacgactttttgctgctgaatgtggtgaaagctaaatttgactttgatgttatac 297
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtatagacggctcaatgctgctgaatgtggtgaaagctaaatttgactttgatgttatac 472
Query: 298 tgtactctaaaatgctaagtggaatataaacatgaagatgaatgataaacagtcaagcta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgtactctaaaatgctaagtggaatataaacatgaagatgaatgataaacagtcaagcta 412
Query: 358 gaagaaaatgctagagactctcctgatgatagtcagcagagaaagacttgccaaataaga 417
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 411 gaagaaaatgctagagactctcctgatgatagtcagcagggaaagacttgccaaataaga 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 820
Length adjustment: 9
Effective length of query: 408
Effective length of database: 811
Effective search space: 330888
Effective search space used: 330888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_n05.g1 MSMg01no501_n05.g1 CHROMAT_FILE:
MSMg01no501_n05.g1 PHD_FILE: MSMg01no501_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:43 2005
(639 letters)
>mm_chr5_97477110_97478148
Length = 1039
Score = 1205 bits (623), Expect = 0.0
Identities = 634/638 (99%)
Strand = Plus / Plus
Query: 1 ttgaattctgttgtttatacctttcacataagccttgcctgcttcccattgtcatattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaattctgttgtttatacctttcacataagccttgcctgcttcccattgtcatattta 260
Query: 61 gttgtctctgtgtttataaaaggcagttagtgttttcattgctttaaactgagtcctgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtctctgtgtttataaaaggcagttagtgttttcattgctttaaactgagtcctgca 320
Query: 121 ttcagaaaaccgagtattgtatagctgtgctttcatggtttttgaatttcaaagttttct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagaaaaccgagtattgtatagctgtgctttcatggtttttgaatttcaaagttttca 380
Query: 181 gtgctaaatttgattcattcagtacatatacttttacataattaattgtagtactaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctaaatttgattcattcagtacatatacttttacataattaattgtagtactaatgc 440
Query: 241 tatttanatccttttgatgtcactcagaatgtttgaattaattaatcacgaggtaatagc 300
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttatatccatttgatgtcactcagaatgtttgaattaattaatcacgaggtaatagc 500
Query: 301 cagattgctaaggctgtgtagttttgtggttatgtaggtatttggatatactcctgttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagattgctaaggctgtgtagttttgtggttatgtaggtatttggatatactcctgttag 560
Query: 361 cagtaatccagaaggagaggttgtgactgtgtattcgtgataaagctgctttcattagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtaatccagaaggagaggttgtgactgtgtattcgtgataaagctgctttcattagtc 620
Query: 421 ttatctttctttcctgtagactttccttaaaagcagcaattttcatttgatttctgttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatctttctttcctgtagactttccttaaaagcagcaattttcatttgatttctgttaa 680
Query: 481 atccatgatgctgttgctgtgagagtggggagtgagcacttttatttttgaatctaagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atccatgatgctgttgctgtgagagtggggagtgagcacttttatttttgaatctaagag 740
Query: 541 ttgaaaagatggccaacaatggagaatgagaaatatcagtaaccccaaccccaattgctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgaaaagatggccaacaatggagaatgagaaatatcagtaaccccaaccccaattgctt 800
Query: 601 cccttaacccttattcttaccctagcactaacactaac 638
|||||||||||||||||||||||| |||||||||||||
Sbjct: 801 cccttaacccttattcttaccctatcactaacactaac 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
