Query= MSMg01no502_b20.b1 MSMg01no502_b20.b1 CHROMAT_FILE:
MSMg01no502_b20.b1 PHD_FILE: MSMg01no502_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:04 2005
(559 letters)
>mm_chr5_52300371_52301328
Length = 958
Score = 1029 bits (532), Expect = 0.0
Identities = 544/548 (99%), Gaps = 1/548 (0%)
Strand = Plus / Plus
Query: 12 ggaattccatagtgtatttagttatgcaattatcttactgtattaacaaacgctaaagca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ggaattccatagtgtatttagttatgcaattatcttactgtattaacaaacgctaaagca 271
Query: 72 cagccgcggttgcttgagactcaggcaatttttggaagaacaaaatttattctttccctt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cagccgcggttgcttgagactcaggcaatttttggaagaacaaaatttattctttccctt 331
Query: 132 agctgattacttctcaggagtccatccgttcctctggattatagaaatgattctattttt 191
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agttgattacttctcaggagtccatccgttcctctggattatagaaatgattctattttt 391
Query: 192 gaactgcttcattcagaaatataaagcaagccagaccctcactctttgccagtccaaatt 251
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 392 gaactgcttcattcagaaatataaagcaagccagaccctcactgtttgccaatccaaatt 451
Query: 252 taaccccagtacaaactaaacatatttcgtcgaggggtggggttggnggggagaaatgtc 311
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 452 taaccccagtacaaactaaacatatttcgtcgaggggtggggttgg-ggggagaaatgtc 510
Query: 312 cacaaaattcacatcattttctcccatgaactgcttcaggctctttttctcttttgaaat 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cacaaaattcacatcattttctcccatgaactgcttcaggctctttttctcttttgaaat 570
Query: 372 tccaatgactatagtgtaaatagaaattttaaaaagtggttgtacaaattgcatgctttc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tccaatgactatagtgtaaatagaaattttaaaaagtggttgtacaaattgcatgctttc 630
Query: 432 agtgatgtgaacacaaatgcatttctgttcatttgcttaataagaatttatccccacaaa 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agtgatgtgaacacaaatgcatttctgttcatttgcttaataagaatttatccccacaaa 690
Query: 492 gttcataaatcaggctgtaaagcctggagcacaccatcaaaacatcaaaaataggtgttc 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gttcataaatcaggctgtaaagcctggagcacaccatcaaaacatcaaaaataggtgttc 750
Query: 552 tctgatgc 559
||||||||
Sbjct: 751 tctgatgc 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space: 520452
Effective search space used: 520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_b20.g1 MSMg01no502_b20.g1 CHROMAT_FILE:
MSMg01no502_b20.g1 PHD_FILE: MSMg01no502_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:04 2005
(610 letters)
>mm_chr5_52346814_52347823
Length = 1010
Score = 1087 bits (562), Expect = 0.0
Identities = 571/574 (99%)
Strand = Plus / Minus
Query: 1 agtgtctgtctccctggatgacttgggaggaagttaaatgctaagagctgcagaaatggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 agtgtctgtctccctggatgacttgggaggaagttaaatgctaagagctgcagaaatggt 515
Query: 61 acccctatgggtaagcagaatgtccaggaatgtcgccaccgtctcccagtgcagaccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acccctatgggtaagcagaatgtccaggaatgtcgccaccgtctcccagtgcagaccagc 455
Query: 121 actctccccagtgtgagtctggacaatggtggctccttcaagaggtagtcatagggacct 180
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 454 attctccccagtgtgagtctggacaatggtggctccttcaagaggcagtcatagggacct 395
Query: 181 atcttctgctagattaagggagcaagtagtagaaagaccccaggcaggatctttggatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atcttctgctagattaagggagcaagtagtagaaagaccccaggcaggatctttggatct 335
Query: 241 tagcgagtcactggctaagaaacttagagtatgttgctttaaaaacacatgcacatactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tagcgagtcactggctaagaaacttagagtatgttgctttaaaaacacatgcacatactt 275
Query: 301 tttgattgttgactgtgggaagtggggaggggggaatacattttaagtgctgactgtata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tttgattgttgactgtgggaagtggggaggggggaatacattttaagtgctgactgtata 215
Query: 361 gaattttctttggtggctttagcaagctgactaaggtcttgattaactggtcttggtatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattttctttggtggctttagcaagctgactaaggtcttgattaactggtcttggtatt 155
Query: 421 cactaaatagaccgcaggctacttaaagacctgatgactcagtttctctgtcaataaacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 cactaaatagaccgcaggctacttaaagacctgatgactcagtttctctgtcaataaacc 95
Query: 481 tatgtaggtaattttacctatcccacagggcgaattgtaatttgctacaaatttcagaca 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 94 tatgtaggtaattttacctatcccacagggcgaattgcaatttgctacaaatttcagaca 35
Query: 541 cgttagatttaagtctccactgatgttgttattt 574
||||||||||||||||||||||||||||||||||
Sbjct: 34 cgttagatttaagtctccactgatgttgttattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
