Query= MSMg01no502_i04.b1 MSMg01no502_i04.b1 CHROMAT_FILE:
MSMg01no502_i04.b1 PHD_FILE: MSMg01no502_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:34 2005
(680 letters)
>mm_chr5_8517204_8518283
Length = 1080
Score = 1236 bits (639), Expect = 0.0
Identities = 666/675 (98%), Gaps = 1/675 (0%)
Strand = Plus / Plus
Query: 7 gaattctcgtgtatcaattaaatcactctcctgctctttgtcttccaacgtagccttatg 66
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctcgtgtaagaattacatcactctcctgctctttgtcttccaacgtagccttatg 265
Query: 67 caaaggaatcttgtgaggaagcttaaagcaatctggaggatacagctctattatttcaag 126
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaaggaatcttgtgaggcagcttaaagcaatctggaggatacagctctattatttcaag 325
Query: 127 gtaaatctgaaactcctaaactcaaggaaacagtccaactcttatcaatcaaaaatggtc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtaaatctgaaactcctaaactcaaggaaacagtccaactcttatcaatcaaaaatggtc 385
Query: 187 tacttttatcaatggatatatttttaaatgtttattttattttatatggatggatgttta 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cacttttatcaatggatatatttttaaatgtttattttattttatatggatggatgttta 445
Query: 247 gtttgcatgtgtgcctctgtacctcatctgtgcctgttgcttatggaggctagg-aaaaa 305
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 446 gtttgcatgtgtgcctctgtaccacatctgtgcctgttgcttatggaggctaggaaaaaa 505
Query: 306 aaaccatcagatcatctggaattgacgctatacattatagacagttgtgagccaccatgt 365
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 aaaacatcagatcatctggaattgacgctatacattatagacagttgtgaggcaccatgt 565
Query: 366 agatgctgggaattgaacctgggtacctagaaagagtagccagtgctcttaaccactgag 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agatgctgggaattgaacctgggtacctagaaagagtagccagtgctcttaaccactgag 625
Query: 426 ccatctgtacagctttagacactttttatttgttgctttattgttttaattaaaatattt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccatctgtacagctttagacactttttatttgttgctttattgttttaattaaaatattt 685
Query: 486 ttaaaggtattaggaataactgtaaggttcctttgaaaaaacaaaaggatcaataacaca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttaaaggtattaggaataactgtaaggttcctttgaaaaaacaaaaggatcaataacaca 745
Query: 546 gatttattttactattctaaaactataacacagatgaattatttttcaaattaaaatatg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gatttattttactattctaaaactataacacagatgaattatttttcaaattaaaatatg 805
Query: 606 ggattcttcatttaaattatcaaaggtcaaataaacttattaaaatttaattctttaata 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ggattcttcatttaaattatcaaaggtcaaataaacttattaaaatttaattctttaata 865
Query: 666 aaatacttttaataa 680
|||||||||||||||
Sbjct: 866 aaatacttttaataa 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_i04.g1 MSMg01no502_i04.g1 CHROMAT_FILE:
MSMg01no502_i04.g1 PHD_FILE: MSMg01no502_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:34 2005
(630 letters)
>mm_chr5_8692261_8693288
Length = 1028
Score = 580 bits (300), Expect = e-169
Identities = 319/326 (97%), Gaps = 3/326 (0%)
Strand = Plus / Minus
Query: 1 aataaatctcttttatttaacctataaatctatgaccttccatgattgtatgcagacatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aataaatctcttttatttaacctataaatctatgaccttccatgattgtatgcagacatg 264
Query: 61 aatatgaaaaaaaatctgttttaagtttttttctcataaaagatcatgcctgttaaaaga 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatatg--aaaaaatctgttttaagtttttttctcataaaagatcatgcctgttaaaaga 206
Query: 121 aaacaccccccccccctcagggaaccacatggaaggggaggcagaaagagtgtaagagcc 180
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaaca-cccccgcccctcagggaaccacatggaaggggaggcagaaagagtgtaagagcc 147
Query: 181 cgaggggatggagaactccagaagaacaaaggtctctaaatcaactgagcaatgttccta 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 cgaggggatggagaattccagaagaacaaaggtctctaaatcaactgagcaatgttccta 87
Query: 241 tgaactttatgagactgaaaccacagccacagagctgccgtgggtctgcatcaggccctt 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tgaactccatgagactgaaaccacagccacagagctgccgtgggtctgcatcaggccctt 27
Query: 301 gcgtatgtctaaaggcttctagttta 326
||||||||||||||||||||||||||
Sbjct: 26 gcgtatgtctaaaggcttctagttta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1028
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1018
Effective search space: 631160
Effective search space used: 631160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
