Query= MSMg01no502_m17.b1 MSMg01no502_m17.b1 CHROMAT_FILE:
MSMg01no502_m17.b1 PHD_FILE: MSMg01no502_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:55 2005
(623 letters)
>mm_chr5_118195773_118196795
Length = 1023
Score = 1038 bits (537), Expect = 0.0
Identities = 592/617 (95%), Gaps = 12/617 (1%)
Strand = Plus / Plus
Query: 7 gaattcactcttgtgtttattcattcactcatccctttggtggctccctgcagcacctgg 66
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcactcttgtgtttatttattcactcatccctttggtggctccctgcagcacctgg 266
Query: 67 tctgtgtatgtcaggagtcaggctcactgggaaggatgagaaggagaagcagacaagatg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctgtgtatgtcaggagtcaggctcactgggaaggatgagaaggagaagcagacaagatg 326
Query: 127 cagagtgaaaaggtgttgctaccacacaatgtcctttcccagcctgtcattcattctaaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagagtgaaaaggtgttgctaccacacaatgtcctttcccagcctgtcattcattctaaa 386
Query: 187 ctaccagtccctgaagcaaactcaatgaggctctagatgggcttgtataccctccgtcta 246
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 387 ctaccagtccctgaaacaaactcaatgaggctctagacgggcttgtataccctccgtcta 446
Query: 247 gacggctgtccaattgagcgccattatccctacagacacgcccttccccaccccatgaaa 306
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gacgggtgtccaattgagcgccattatccctacagacacgcccttccccaccccatgaaa 506
Query: 307 ggactgtgccatttaccaatggcactcagcacacagcagccacagctttgctgcttctgt 366
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggactgtgccatttgccaatgacactcagcacacagcagccacagctttgctgcttctgt 566
Query: 367 ccccacactgggactcccagctgggacacatggcagacagtgcaatctgagcggtgtgag 426
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 567 ccctacattgggactcccagctgggacacatggcagacagtgcaatctgagtggtgtgag 626
Query: 427 ggacctaaagttattggtgtatgacagctttcccttgagatgtgagccaggcatggtgac 486
|||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 627 ggacctaaagttattggtgtatgacagctttcccttgagatggga---a---------ac 674
Query: 487 acacacgcctgtaatcccagcagctgagaggctgaagcaggaggaccatgagtttgaggc 546
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 acacaggcctgtaatcccagcagctgagaggctgaagcaggaggaccatgagtttgaggc 734
Query: 547 caacctgagctgtatagtgacagtctgtctccaaaagggctaagggggaactggagactg 606
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 caacccgagctgtatagtgacagtctgtctccaaaagggctaagggggaactggagactg 794
Query: 607 ttcagttcagtgcaggc 623
||| |||||||||||||
Sbjct: 795 ttcggttcagtgcaggc 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_m17.g1 MSMg01no502_m17.g1 CHROMAT_FILE:
MSMg01no502_m17.g1 PHD_FILE: MSMg01no502_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:55 2005
(598 letters)
>mm_chr5_118321346_118322347
Length = 1002
Score = 1120 bits (579), Expect = 0.0
Identities = 595/603 (98%), Gaps = 6/603 (0%)
Strand = Plus / Minus
Query: 1 tccaattaagcagggctgattgatgagccaactaactacccgggcagctggttagctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tccaattaagcagggctgattgatgagccaactaactacccgggcagctggttagctcca 743
Query: 61 tctccttaggacttgtgggagcctgagatctgacctcaggtcctcatgttacagagctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tctccttaggacttgtgggagcctgagatctgacctcaggtcctcatgttacagagctgt 683
Query: 121 ggctccaactccctcttggccatctttaggatatgcaaatgctaattagttgtgcagacc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 682 ggctccaactccctcttggccatctttaggatgtgcaaatgctaattagttgtgcagacc 623
Query: 181 c-----ggccagcttgccctgctacagggagagtggacctggaatcctggctcttccatg 235
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 caggctggccagcttgccctgctacagggagagtggacctggaatcctggctcttccatg 563
Query: 236 atgatggagagaggactgggaagctcacaggacccaccagacagagttagattcttccat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgatggagagaggactgggaagctcacaggacccaccagacagagttagattcttccat 503
Query: 296 aacttgtgctggacctccttctcatcttgaaaggtcacaggtcttggtcatcttgcccta 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aacttgtgctggacctccttctcatcttgaaaggtcacaggtcttggtcatcttgcccta 443
Query: 356 cattagttactctgagccagaggaactgcagggtatcagtttccctttcaaactctgatg 415
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cattggttactctgagccagaggaactgcagggtatcagtttccctttcaaactctgatg 383
Query: 416 aaatgttctgaaagtttcagacacccagaggctgccaaacatcccacaggcaagagagag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaatgttctgaaagtttcagacacccagaggctgccaaacatcccacaggcaagagagag 323
Query: 476 ccatctatgaggcagcaaagcacagccttggacccgagtctggtctggctgcttgctagc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 322 ccatctatgaggcagcaaagcacagccttggacccgagtctggtctggctgcttgct-gc 264
Query: 536 tgtgtggcttgggagaaaggacaatcttccatccttgcttttgatatcacagaaaggggg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtgtggcttgggagaaaggacaatcttccatccttgcttttgatatcacagaaaggggg 204
Query: 596 cac 598
|||
Sbjct: 203 cac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1002
Length adjustment: 10
Effective length of query: 588
Effective length of database: 992
Effective search space: 583296
Effective search space used: 583296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
