Query= MSMg01no502_m19.b1 MSMg01no502_m19.b1 CHROMAT_FILE:
MSMg01no502_m19.b1 PHD_FILE: MSMg01no502_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:55 2005
(582 letters)
>mm_chr5_120573628_120574609
Length = 982
Score = 891 bits (461), Expect = 0.0
Identities = 467/469 (99%)
Strand = Plus / Minus
Query: 114 ttctcttagaacgtaaagcactggacagcgacgccagggatgcagctcagcagcagagcg 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 ttctcttagaacgtaaagcactggacagcgacgccagggatgcagctcagcagcagagcg 923
Query: 174 cttgccgaagtaagtgcctgccgactggtctcgcgctacctgttaagtcagcaatacagc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 cttgccgaagtaagtgcctgccgactggtctcgcgctacctgttaagtcagcaatacagc 863
Query: 234 acatacctgaggcttgaactcaggtccccagtcttgcacagcaagcactctgcccacgga 293
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 862 acatacctggggcttgaactcaggtccccagtcttgcacagcaagcactctgcccacaga 803
Query: 294 gctatccagtcccatgccccctccctttttaacagcgagcctccagcctggcacccatgg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gctatccagtcccatgccccctccctttttaacagcgagcctccagcctggcacccatgg 743
Query: 354 gaggcaacggaagcactcctcacactgccactggtctccttcccgtgtctgcagccccga 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaggcaacggaagcactcctcacactgccactggtctccttcccgtgtctgcagccccga 683
Query: 414 gcccagctccttccagctcctgacttcatctgatcctggcctgcccaccctccctttccg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gcccagctccttccagctcctgacttcatctgatcctggcctgcccaccctccctttccg 623
Query: 474 gattcatacctcagtgacattgaacggggctccccggagcttcacggtgtagggggtagt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gattcatacctcagtgacattgaacggggctccccggagcttcacggtgtagggggtagt 563
Query: 534 gggttccttctggctgactggcttctctacctgaggaatcacaaagatg 582
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gggttccttctggctgactggcttctctacctgaggaatcacaaagatg 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_m19.g1 MSMg01no502_m19.g1 CHROMAT_FILE:
MSMg01no502_m19.g1 PHD_FILE: MSMg01no502_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:55 2005
(623 letters)
>mm_chr5_120515991_120517009
Length = 1019
Score = 1056 bits (546), Expect = 0.0
Identities = 598/620 (96%), Gaps = 10/620 (1%)
Strand = Plus / Plus
Query: 1 tcactggggaggtttcagccacagtcaatgcagcttatggtgcaaaggcttgcaccgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactggggaggtttcagccacagtcaatgcagcttatggtgcaaaggcttgcaccgtgc 260
Query: 61 caagtgcgcatgcatgacatgttccgcactgaggctgcgtgaagtcacgtgatgcaatcc 120
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 caagtgtgcatgcatgacatgttccgcactgaggctgcgtgaagtcacatgatgcaatcc 320
Query: 121 atgctcgctcttccagaaacaccttggattttgaactttcagctactgtattttcaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctcgctcttccagaaacaccttggattttgaactttcagctactgtattttcaaacc 380
Query: 181 cctttcaccattgccaatttcttcacaggcttcgtgaccgctatggggttgggacctaga 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cctttcaccattgccaatttcttcacaggcttcgtgtccgctatggggttgggacctaga 440
Query: 241 gtttgatttagttaacacgagcatgtctgttaaaacggatgatgtaggagttgaggggct 300
||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gtttgatggagttaacatgagcatgtctgttaaaacggatgatataggagttgaggggct 500
Query: 301 agctcagcctctcagcacttccccagcatggtcaaggccctggatttcatttccagtgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctcagcctctcagcacttccccagcatggtcaaggccctggatttcatttccagtgct 560
Query: 361 gtgaggagagtgctaagatgatgccatgagctttcagccagacaactaaaaataagagaa 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgaggagagtgctaagttgatgccatgagctttcagccagacaactaaaaataagag-- 618
Query: 421 ggagagagatggtatttcagaatgaggggggccatattagtcccacgtgaccctgagcca 480
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 619 -gagagagacggtatttcagaatgaggggg-ccatattagtcccacgtgaccctgagcca 676
Query: 481 atggtccagccttcactactacgcatgccagccttgctgtccaccaaataccgttaagct 540
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 677 atggtccagccttcactactacgcataccagccttgctgtccaccaaata------agct 730
Query: 541 ctctgggccacagtttcccatctgcaacatgggtgagaacaattgataattttgatgaat 600
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 731 ctctgggccacagtttcccatctgcaacatgggtgagagcaattgaaaattttgatgaat 790
Query: 601 ctaatagagttgaagcccct 620
||||||||||||||||||||
Sbjct: 791 ctaatagagttgaagcccct 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1019
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1009
Effective search space: 618517
Effective search space used: 618517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
