Query= MSMg01no503_a13.b1 MSMg01no503_a13.b1 CHROMAT_FILE:
MSMg01no503_a13.b1 PHD_FILE: MSMg01no503_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:12 2005
(405 letters)
>mm_chr5_71164916_71165720
Length = 805
Score = 725 bits (375), Expect = 0.0
Identities = 397/411 (96%), Gaps = 12/411 (2%)
Strand = Plus / Plus
Query: 1 agaccctcatgacaacaccagctgtggcaggagaaattctaggtctcactcctagatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccctcatgacaacaccagctgtggcaggagaaattctaggtctcactcctagatgta 260
Query: 61 ttgttacaggggatcagttgttgctgagaaccagttgccccaggaatagactcccacata 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttgttacaggggatcagttgttgctgagaaccagttgccccaggaacagactcccacata 320
Query: 121 atttgtccaatcccaaatgagcaaccctggacaaatgcatataagagcaatggtaaatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgtccaatcccaaatgagcaaccctggacaaatgcatataagagcaatggtaaatgg 380
Query: 181 acacagagtgctgtgtgaacatctgcacacatattatgtacaaatatgtttgtatatgtt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacagagtgctgtgtgaacatctgcacacatattatgtacaaatatgtttgtatatgt- 439
Query: 241 tttttaa------gagttgaaggagtggttgtgaacaaggaagggataaaagagcaggag 294
|| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 -----aacaagaagagttgaaggagtggttgtgaacaaggaagggataaaagagcaggag 494
Query: 295 aaaaaaatgaaagaaaaaggagagtgataaatatatgcaatgttccctcctgtgtgaagt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaaaaaatgaaagaaaaaggagagtgataaatatatgcaatgttccctcctgtgtgaagt 554
Query: 355 tatcatcatatcaatgttaaaaactaaaaataaaacataccgaagtcttgt 405
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tatcatcataacaatgttaaaaactaaaaataaaacataccgaagtcttgt 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_a13.g1 MSMg01no503_a13.g1 CHROMAT_FILE:
MSMg01no503_a13.g1 PHD_FILE: MSMg01no503_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:12 2005
(554 letters)
>mm_chr5_71363225_71364178
Length = 954
Score = 1025 bits (530), Expect = 0.0
Identities = 548/554 (98%), Gaps = 1/554 (0%)
Strand = Plus / Minus
Query: 1 ctaactatgttacagtttgcacttgcaaatatttaatagtagagtttaagacacctatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctaactatgttacagtttgcacttgcaaatatttaatagtagagtttaagacacctatct 498
Query: 61 ttttttctcagttataagatatagacattctaattacagttactagtttatttgaaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttttttctcagttataagatatagacattctaattacagttactagtttatttgaaagtt 438
Query: 121 gtgtttgcctaataaccatagtagagataaaatattgagtgggaattctcaattttctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgtttgcctaataaccatagtagagataaaatattgagtgggaattctcaattttctat 378
Query: 181 gcttaatttctgactgattccagcactgttgatctcttctgttttcatttcccatatatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 377 gcttaatttctgactgattccagcactgttgatctcttctgttttcatttcccatatagt 318
Query: 241 ctattcttcttccatttatctttgtgattacttctctttagctatttggttatgcatgta 300
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 317 caattcttcttccgtttatctttgtgattacttctctttagctatttggttatgcatata 258
Query: 301 ctttctccacaaattacctgactatgacagtacactacaggctcttttagagttttgatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctttctccacaaattacctgactatgacagtacactacaggctcttttagagttttgatt 198
Query: 361 aattttttattataaattctgcaatacattgatgagagaacttatttatctcaactgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aattttttattataaattctgcaatacattgatgagagaacttatttatctcaactgaaa 138
Query: 421 agttttcaaaaaaattaaacctcctaagatttattctatgtatgccatttagatttcact 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 137 agttttcaaaaaaattaaacctcctaagatttattttatgtatgccatttagatttcact 78
Query: 481 agattcaatttttaagtggaaaataaaagttttttttttaaatacagaagttttgtcctt 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 77 agattcaatttttaagtggaaaataaaag-tttttttttaaatacagaagttttgtcctt 19
Query: 541 tcaaagccagttgc 554
||||||||||||||
Sbjct: 18 tcaaagccagttgc 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
