Query= MSMg01no503_i12.b1 MSMg01no503_i12.b1 CHROMAT_FILE:
MSMg01no503_i12.b1 PHD_FILE: MSMg01no503_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:50 2005
(567 letters)
>mm_chr5_120752897_120753861
Length = 965
Score = 1038 bits (537), Expect = 0.0
Identities = 559/569 (98%), Gaps = 6/569 (1%)
Strand = Plus / Plus
Query: 1 aagcttccatggtggactctgaccgctgtgggcatcttttatcattttttacacacatac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcttccatggtggactctgaccgctgtgggcatcttttatcattttttacacacataa 260
Query: 61 cctctgaccctggggaatccctggcaggaagtttctattgagactccagtcatagatccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctgaccctggggaatccctggcaggaagtttctattgagactccagtcatagatccc 320
Query: 121 acttcctgggagaaaaagatctccctgggtgtggtcaccccacttggacacccttagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttcctgggagaaaaagatctccctgggtgtggtcaccccacttggacacccttagctc 380
Query: 181 ccttcctgaccaggtccttagtgagtggggagggtgggtcagaacccatatagaggtgtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ccttcctgaccaggtccttagtgagtggggagggtgggtcagaacccatatagaggcgtg 440
Query: 241 gttttttat--ctaggagaattcaaagactgctcctgtagtgtgtggcttatgttgggac 298
||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtt----aggactaggagaattcaaagactgctcctgtagtgtgtggcttatgttgggac 496
Query: 299 ttctgatcccttttgctcctggtgtgaaagactgggaggatctttctagaactgcggagg 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 497 ttctgatcccttttgctcctggtgtgaaagactgggaggatctttctagaactgtggagg 556
Query: 359 agggacttgaacccccagggaagctaaccggaagtccgtagagttagttgcccacccctc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agggacttgaacccccagggaagctaaccggaagtccgtagagttagttgcccacccctc 616
Query: 419 taagatgtcgtgattcctaaggaaaagaatcacccactcaaaggtctgactggaaacctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taagatgtcgtgattcctaaggaaaagaatcacccactcaaaggtctgactggaaacctc 676
Query: 479 gggtggctaggaccgttttcccatcacccataaacatgaggacaggaagcagtaggaagg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gggtggctaggaccgttttcccatcacccataaacatgaggacaggaagcagtaggaagg 736
Query: 539 tactgagctagaagtcacaactgagctag 567
|||||||||||||||||||||||||||||
Sbjct: 737 tactgagctagaagtcacaactgagctag 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 965
Length adjustment: 10
Effective length of query: 557
Effective length of database: 955
Effective search space: 531935
Effective search space used: 531935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_i12.g1 MSMg01no503_i12.g1 CHROMAT_FILE:
MSMg01no503_i12.g1 PHD_FILE: MSMg01no503_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:50 2005
(485 letters)
>mm_chr5_120885185_120886069
Length = 885
Score = 903 bits (467), Expect = 0.0
Identities = 479/483 (99%)
Strand = Plus / Minus
Query: 1 acagaggtctggtaacagtgttcaaaaatcacatcgctaggacacaggaactggataaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acagaggtctggtaacagtgttcaaaaatcacatcgctaggacacaggaactggataaaa 624
Query: 61 atcttttggttaaaaattccccgcctccaaagggtgcccagatggcccccaacctcgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atcttttggttaaaaattccccgcctccaaagggtgcccagatggcccccaacctcgggt 564
Query: 121 gcacgactgtctctacgcaaccgttcccccccatccctggccgttcacagactactctgc 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 563 gcacgactgtctctacgcaaccgttcccccccatccccggccgttcacagactacgctgc 504
Query: 181 ccgacgggaggtacgcctgctggtctggagggctggcccatcggtcgtacctgaatgacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccgacgggaggtacgcctgctggtctggagggctggcccatcggtcgtacctgaatgacc 444
Query: 241 cttttgttgaggcccgtctcctgtgccagctgttcgcgaatgtggcgcgtgggcttgggc 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctcatgttgaggcccgtctcctgtgccagctgttcgcgaatgtggcgcgtgggcttgggc 384
Query: 301 gtggctgcgaaggctgccttgagcgtctccagctgcttggccttgatggtggtgcgcggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtggctgcgaaggctgccttgagcgtctccagctgcttggccttgatggtggtgcgcggg 324
Query: 361 ccgcgccgtttggtgccggagttctgttcctcattctcgttgttagcggtttccttgtcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccgcgccgtttggtgccggagttctgttcctcattctcgttgttagcggtttccttgtcc 264
Query: 421 gatgaggtcgaattgtcggtctctttggggtcgtcctgtaacggatcctggaggtccggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gatgaggtcgaattgtcggtctctttggggtcgtcctgtaacggatcctggaggtccggg 204
Query: 481 gac 483
|||
Sbjct: 203 gac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
