BAC Information

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BAC

Clone NameMSMg01-503P07
Chromosome5 (Build37)
Map Location 97,661,617 - 97,662,085
singlet/doubletsinglet
Overlap genenone
Upstream geneMrpl1, Fras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598
Downstream geneEG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503P07.T7 (MSMg01no503_p07.b1)MSMg01-503P07.TJ (MSMg01no503_p07.g1)
ACCAG578950AG578951
length712708
length of high quality
(start - end)
161 (80 - 240)469 (87 - 555)
definitionCHROMAT_FILE: MSMg01no503_p07.b1 PHD_FILE: MSMg01no503_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:24 2005CHROMAT_FILE: MSMg01no503_p07.g1 PHD_FILE: MSMg01no503_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTCCCTATTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCT
AGAGACCCGCGGAAATCAAGAATTACTATGTATATGTACTGTTTGATGAT
ATGTATATGTACTGCTTGATGATATGTATATGTACTGTTTGATGATATGT
ATATGTACTGTTTGATGACATGCATATGTATTGTTTGCTGATGATAAGCA
GAATTAATCTGCTCTTTAGAATATTTTACTTTGATCAGCAGCAGCGGTCG
CCATCTGGGTTCCGGGACTCCGCGGGACCTAGGAAATTAGTCTGAACAGG
TTAGAGGGTGCACCAGAGAACCGTACAGCTTCTGGGACGGGCGGAAGCAC
AGAGCCGCTGAGGCAGCATCCTGGGCGGGCCGCAGATAACCGGCCTCCAT
CCGGACCAGAGGACAGGTGTCCGCCGGGCTTGGGAAGCAACCTCTTCCTC
ATTATCAGCGGTCGCCATCTTGGTTCCGGGACTCACCAGAATTTATGAAA
TTAGTCTGAACAGGTTAGAGGGTGCGCCAGATAACCGGACAGCTTCTGGG
ATGGGCATAATCACATAGCCGCTGAAGCAGCACCCTGGGCGGGCCGCACA
TAACCTGCCACTTTCCCGATCACATGATTGGTGTCCGCCTTGGCTCGGGA
GATTTCCTCTTCCTCACGATCACCGTTCACCATTTCGGTTTTTGAACTTT
CTGCTATTTTTG
CCTTTCTTTTTCCCATGCTATGTGTAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGACTACAAGCTA
TAAGATTAAATAAACCGTTTTTTCTCAACATTGCTTTTGGCCATGGTCTT
TTATCACTACAATAAGAACCCTAATTAAAACAATACCTTAATGCAATCGG
AGGTTCTAAACAAAAAACATAGCAATTTATCTGAATTTCACTATGGCCAC
CAGACTGAGATATCACTAGCTCTTTTGATTCATAAGCTTCCTCATTTTCT
GTTTTCCTGATTGGAGCTCAGGGAAATATTACCTTTTGGACCCTATAGGA
CATAATATTCATATATTATACTTCTATTCATTCCTGTAAGTTTCTGCCCT
TTTTCTTTTATATAATTTCATATCAATGCACCCAACACAAACCAACATAC
ATTATTAAATGTAGAGAGCAGAGGGATTCCTGAGTGAGTAGATTCCAGAC
TGACCATGCTCTGCTGATGTGGGTGTGGTCACACCAAAGACCTTCTAACC
TCAGGCTCATCAGGAAGGCAAAGCATTGGGGTGGAGGTAGTTGTCAAGTG
AGTGTGTCAATAGCGTGTGCAGAAAATATGCACTATAGCTTTCTACCCCT
GAATATTCATGACTTCAGGACCCCTTCCCCGCAGAGACTGCTCTGACAGA
GATGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_p07.g1 MSMg01no503_p07.g1 CHROMAT_FILE:
MSMg01no503_p07.g1 PHD_FILE: MSMg01no503_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:24 2005
         (469 letters)



>mm_chr5_97661417_97662285
          Length = 869

 Score =  884 bits (457), Expect = 0.0
 Identities = 466/469 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagactacaagctataagattaaataaaccgttttttctcaacattgcttttggccatgg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 669 tagactacaagctataagattaaataaaccgttttttctccacattgcttttggccatgg 610

                                                                       
Query: 61  tcttttatcactacaataagaaccctaattaaaacaataccttaatgcaatcggaggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcttttatcactacaataagaaccctaattaaaacaataccttaatgcaatcggaggttc 550

                                                                       
Query: 121 taaacaaaaaacatagcaatttatctgaatttcactatggccaccagactgagatatcac 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 549 taaacaaaaaacatagcaatttatctgaatttcactatggccaacagactgagatatcac 490

                                                                       
Query: 181 tagctcttttgattcataagcttcctcattttctgttttcctgattggagctcagggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tagctcttttgattcataagcttcctcattttctgttttcctgattggagctcagggaaa 430

                                                                       
Query: 241 tattaccttttggaccctataggacataatattcatatattatacttctattcattcctg 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 429 tattaccttttggaccctataggacataatattcatatattatacttccattcattcctg 370

                                                                       
Query: 301 taagtttctgccctttttcttttatataatttcatatcaatgcacccaacacaaaccaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 taagtttctgccctttttcttttatataatttcatatcaatgcacccaacacaaaccaac 310

                                                                       
Query: 361 atacattattaaatgtagagagcagagggattcctgagtgagtagattccagactgacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atacattattaaatgtagagagcagagggattcctgagtgagtagattccagactgacca 250

                                                            
Query: 421 tgctctgctgatgtgggtgtggtcacaccaaagaccttctaacctcagg 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgctctgctgatgtgggtgtggtcacaccaaagaccttctaacctcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)