Query= MSMg01no504_f20.b1 MSMg01no504_f20.b1 CHROMAT_FILE:
MSMg01no504_f20.b1 PHD_FILE: MSMg01no504_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:57 2005
(628 letters)
>mm_chr5_25069587_25070614
Length = 1028
Score = 605 bits (313), Expect = e-177
Identities = 313/313 (100%)
Strand = Plus / Minus
Query: 316 aggggtgtctgcagctgagacaaatgggtgaggtggtggaaggatgttggacaagatctg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 aggggtgtctgcagctgagacaaatgggtgaggtggtggaaggatgttggacaagatctg 969
Query: 376 atgatccactgaagatgggagctgagaggaatggggtactgtggcagttggtctgctaga 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 atgatccactgaagatgggagctgagaggaatggggtactgtggcagttggtctgctaga 909
Query: 436 gttgggcatgcgactgggggctggatttggaagaggatgacaaatgaagcttgcctatct 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gttgggcatgcgactgggggctggatttggaagaggatgacaaatgaagcttgcctatct 849
Query: 496 gcttccctggccagcgtggctgttagagcccttaatcaccagctcagagtaaataagtgg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gcttccctggccagcgtggctgttagagcccttaatcaccagctcagagtaaataagtgg 789
Query: 556 accactgacattaggggctgtctgaaaaccccagagagaacgctccaacaatccatttga 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 accactgacattaggggctgtctgaaaaccccagagagaacgctccaacaatccatttga 729
Query: 616 gggaataacacca 628
|||||||||||||
Sbjct: 728 gggaataacacca 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_f20.g1 MSMg01no504_f20.g1 CHROMAT_FILE:
MSMg01no504_f20.g1 PHD_FILE: MSMg01no504_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:57 2005
(590 letters)
>mm_chr5_24928125_24929112
Length = 988
Score = 1044 bits (540), Expect = 0.0
Identities = 577/594 (97%), Gaps = 12/594 (2%)
Strand = Plus / Plus
Query: 1 caggacagccaacactacataaaggaaacactgttttaaaaaaaatttaaataagataaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 caggacagccaacactacataaaggaaacactgtttaaaaaaaaatttaaataagataaa 260
Query: 61 ttttagtatgtgcatagtataatgaggttaaaggaagaagtagatagtgtgcttaataag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttagtatgtgcatagtataatgaggttaaaggaagaagtagatagtgtgcttaataag 320
Query: 121 agcagaagcccaatgataaaca--aaaattgactagcagatctctgactccccactttta 178
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagaagcccaatgat----atgaaaattgactagcagatctctgactccccactttta 376
Query: 179 aaaaaaggagcagtctctgccagaggatattcattttaaaaataaggatcaagaggctca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaaaaggagcagtctctgccagaggatattcattttaaaaataaggatcaagaggctca 436
Query: 239 gtcagcaatgtgatcatcatgtcagcatggattcagatggcgagtacccacaaaaaaaaa 298
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 437 gtcagcaatgtgatcatcatgccagcatggattcagatggcgagtacccac--aaaaaaa 494
Query: 299 agctaggggttcaccatctgtacatccagaaccaggagggaagtgacaagtagagtccta 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 495 agctaggggttcaccatctgtacatccagaaccaggagggaagtgacaagtagactccta 554
Query: 359 gagagaatagacactcaacacagaaaaatgactgtcttcagcttcactaaaactaattaa 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 555 gagagaatagacactcaacacagaaaaatgactgtcttcagctgcactaaaactaattaa 614
Query: 419 ttgttaaggaattccttaaaaagtgaaatgaagagcagctgaagaagataactggcactg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttgttaaggaattccttaaaaagtgaaatgaagagcagctgaagaagataactggcactg 674
Query: 479 actttagatttccacgtgtactttactgtgc--gaacgcacacactaaccccacatatat 536
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 675 actttagatttccacgtgtactttactgtgcaaga--gcacacactaaccccacatatat 732
Query: 537 atgtacacacccttataaacacataccttcccatatgacaaagaatcaagtctc 590
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 733 atgtacacacccttataaacacatatcttcccatatgacaaagaatcaagtctc 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 988
Length adjustment: 10
Effective length of query: 580
Effective length of database: 978
Effective search space: 567240
Effective search space used: 567240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
