Query= MSMg01no504_j02.b1 MSMg01no504_j02.b1 CHROMAT_FILE:
MSMg01no504_j02.b1 PHD_FILE: MSMg01no504_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:12 2005
(667 letters)
>mm_chr5_137737394_137738460
Length = 1067
Score = 1220 bits (631), Expect = 0.0
Identities = 655/663 (98%)
Strand = Plus / Plus
Query: 5 gaattctaggattagggcctgaaggttagtggagcacacttctcaaagtagaagaaagaa 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggaatagggcctgaaggttagtggagcacacttctcaaagtagaagaaagaa 264
Query: 65 gtcaaaggtatggcagccaccacagatcgtatcttactctgggcagggccaggtggctga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcaaaggtatggcagccaccacagatcgtatcttactctgggcagggccaggtggctga 324
Query: 125 gctggcttgatctcaggcaaagctgggcgcttggcatctgtgagaaagttattgaagaac 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 gctggcttgatctcaggcaaagctgggcgcttggcgtctgtgagaaagttattgaagaac 384
Query: 185 gccacctccttcttcacctcctcgatcttctcggcatgcttattgaagatatgcttccgc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 gccacctccttcttcacctcctcgatcttctcggcatgcttattgaagatatgcttgcgc 444
Query: 245 acaaactccgggccctgggaggagcagatgaggacggacagcatgctgcagtctcttccc 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 acaaactccgggccctgggaggagcggatgaggacggacagcatgctgcagtctcttccc 504
Query: 305 caccgaaccccgctggaaggtaacagcttcctccaggcttttaggggttttgctacccaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caccgaaccccgctggaaggtaacagcttcctccaggcttttaggggttttgctacccaa 564
Query: 365 gcccccctcccaatctaccctcacaattcttttcacatctcagaccttgaatttcttgcc 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gccctcctcccaatctaccctcacaattcttttcacatctcagaccttgaatttcttgcc 624
Query: 425 actgagaggacatagccacttatccttgcccagttcctgcgtgttggaggtgacaaactt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actgagaggacatagccacttatccttgcccagttcctgcgtgttggaggtgacaaactt 684
Query: 485 ctccacttcctgctctgggtctttccgacccatcttctgggcctcttcctcagaaaggga 544
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 ctccacttcctgctctgggtcttttcgacccatcttctgggcctcttcctcagaaaggga 744
Query: 545 ttcacgcacactcaacagcggagtcagtttctcctcaaatgtcttctgccactccagcac 604
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcacgcacactcaacagtggagtcagtttctcctcaaatgtcttctgccactccagcac 804
Query: 605 tgtgtgggtgacaaaggcaggctgagagggagactggagcaagggggaagaggagggaca 664
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtgtgggtgacaaaggcaagctgagagggagactggagcaagggggaagaggagggaca 864
Query: 665 gta 667
|||
Sbjct: 865 gta 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_j02.g1 MSMg01no504_j02.g1 CHROMAT_FILE:
MSMg01no504_j02.g1 PHD_FILE: MSMg01no504_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:12 2005
(649 letters)
>mm_chr5_137833491_137834539
Length = 1049
Score = 1089 bits (563), Expect = 0.0
Identities = 635/675 (94%), Gaps = 26/675 (3%)
Strand = Plus / Minus
Query: 1 actgtgactgcaaagacttccagggtagcctcatcaaggtgagcaggcatggcaactgta 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 785 actgtgactgcaaagacttccagggtagcctcattaaggtgagcaggcatggcaactgta 726
Query: 61 acgggcaggggtgt--------------ggggtgggagctggctcggtggataaaatgct 106
| |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 725 atgggcaggggtgtggggtaggggttggggggtgggagctggctcagtggataaaatgct 666
Query: 107 tgctgcacaaatgtgaagacctgagtttgaatccccatgacccatagaagttgggcacag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgctgcacaaatgtgaagacctgagtttgaatccccatgacccatagaagttgggcacag 606
Query: 167 ctgactgtgacaccagtttccctgctatgatataggaggtgaagctaggagaaaacccaa 226
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 605 ctgactgtgacaccagtttccctgctatgatatagaaggtgaagctaggagaaagcccaa 546
Query: 227 gaagtgtgggtaccaactctggctgtatacaaacaagcagtgaataccagcatagagaca 286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaagtgtgggtaccaactctggctgtatacaaacaagcagtgaataccagcatagagaca 486
Query: 287 gagggaggcagatggatcttgtcttagtgcaatgtggaaggcaaggaccagcacctcagt 346
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 485 gagggaggcagatggatcttgtcttagtgcaatgtggaaggcaagaaccagcacctcagt 426
Query: 347 gtgg------------acacacacacacacacacacagcattctagtaaggctgaatcat 394
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtggacacacacacacacacacacacacacacacacagcattctagtaaggctgaatcat 366
Query: 395 gcccactccctgtggcaattttaaaaactcctttcacctgtagttggttgactcaataga 454
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 365 gcccactccctgtggcaattttaaaaactcttttcatctgtagttggttgactcagtaga 306
Query: 455 tatgaaacctaccgacacagagggcaaatataagaccctcgaataggaacttccaactag 514
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 tatgaaacctaccgacacagagggcaaatataagaccctcgaataggaactcccaactag 246
Query: 515 ggagcctatgtggaactaacctaggccctctgcacagttgtgtagcttcatcttcttatg 574
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 245 ggagcctatgtggaactaacctaggccctctgcacagttgtgcagcttcatcttcttgtg 186
Query: 575 ggactcctctaacagtgagagcaggggttgtctctgactctgttgcctgcctttgggacc 634
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 185 ggactcctctaacagtgagagcaggggctgtctctgactctgttgcctgcctttgggacc 126
Query: 635 ctttcctcctactgg 649
|||||||||||||||
Sbjct: 125 ctttcctcctactgg 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
