BAC Information

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BAC

Clone NameMSMg01-506P14
Chromosome5 (Build37)
Map Location 151,024,258 - 151,152,904
singlet/doubletdoublet
Overlap geneLOC667470, Fry
Upstream geneUspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2
Downstream geneLOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506P14.T7 (MSMg01no506_p14.b1)MSMg01-506P14.TJ (MSMg01no506_p14.g1)
ACCAG581238AG581239
length751764
length of high quality
(start - end)		669 (47 - 715)640 (78 - 717)
definitionCHROMAT_FILE: MSMg01no506_p14.b1 PHD_FILE: MSMg01no506_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:20 2005CHROMAT_FILE: MSMg01no506_p14.g1 PHD_FILE: MSMg01no506_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,024,258 - 151,024,923)(151,152,420 - 151,152,904)
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTATTATTTCTCGGTCTTACGTACAGAAAAATATTTTTGTTTGG
CAAAGTGTTGACAGCTGGGGAGACGTGTGACGTCATATTGCTGAACGTCC
TGACTCACGGGCAGCAGAGAGTTGCGTTTGTAAGCAGTGACGTGTGAGTT
TGCAGACAAAGGTAACCATTATGCCTGCTGAGGACCCATTTTTTGGAAGG
CCCCAGACTCAGCACAGAGAGATTCAGGAATTCTGAAATCTTGGCAGGCA
CCATGATTTTTTTTTACCACTTGAACCATTCAGGTGCCTTTCCTCACCTC
TGCGCCAGTCTGATTGGCTGGAATAGACCTAGTCCCTCCCTGCTCCATCG
CCCTCCTTGTCTGAACTAAAATCAAGACTCTTTGAGGACTCCTTGTGGGG
GTGAGCCCTTCAGGAAAGCCATGTTGCCATCCAGGCTGCATTGGATCCTT
TAATAAACACGTCCTAGCGGCCTCTACAGACTTTGATTTAAACCTGCTAG
CCACTTCCCTGTCTTCTTTGCTGGATAAGAAATTACTAATTTGCCACCTT
ATTAGCAACATGTAAACTAGGCACAGTGACATATGCCTTTAATCCCAGCA
CTTGGGAGGCGGAGGCAAGCAGATTTCTGTGGCCGAGGTCAGTTTGTTCT
ACATAGTGAGTTCCAGAACAGCCAAGGGCTATATTGAGAGACCCTGTCTC
N

NACGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGATTGTTTAAGTATGTTTGTT
CCCTATGTGGGCAAGGTCTGAAAACTCACTGAAAAGATACCTTTTGACAC
AGGATCACTCTAGGTTTCCCAGGCTGGCCTGGAACTCTCGGTATCCCTGG
CAGACTGCAAGCCTTAAACCTCCCAATTCTAGGGCTAGGGAGGGCAGGCA
GAAAGATTCTTGACTTGAATATGTTACAATTCTCTCCTTTAATGCTTATT
GTCTGACACCTCTGAGCTAGGTGCATGCTCCACAAGATCAGGCACACAGT
AGGTACTCAGGAGCGATGCTGAGCACATTAATTGCTTAGGAGTGGGAAGT
CCTGATGTGGAGGTGGTTAAGCAGAAGCCCCACACACCCTTGTGCACCCA
CTCGGAGGACGTCACTGAGAGGCGTCTCTGAGTGAACACGGTCAGAATGT
GTAATTAATATCAATTCATTTCTCCCGTTGAATAACAGGCACTTCTCATA
GAAAAGGCCTGCAGTTATACATCTATTCTTTTACTCTTAATCCACAGCTA
ACAAGGAGAGGTAGAAAAAGGCAGGCTGCTTACGTAACTCAGTACGTCAA
TACGATGAGGCAGTGGCTAAAATTTTACTTTTTCATTTAAAAATAGATGC
AACTATTTTTTTTTTTTTACTGTNGAAAGTTCCATATAACACAAACATGT
TATTTTAGGATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_p14.b1 MSMg01no506_p14.b1 CHROMAT_FILE:
MSMg01no506_p14.b1 PHD_FILE: MSMg01no506_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:20 2005
         (669 letters)



>mm_chr5_151024055_151025123
          Length = 1069

 Score = 1272 bits (658), Expect = 0.0
 Identities = 664/666 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttattatttctcggtcttacgtacagaaaaatatttttgtttggcaaagtgtt 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttattataactcggtcttacgtacagaaaaatatttttgtttggcaaagtgtt 263

                                                                       
Query: 64  gacagctggggagacgtgtgacgtcatattgctgaacgtcctgactcacgggcagcagag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacagctggggagacgtgtgacgtcatattgctgaacgtcctgactcacgggcagcagag 323

                                                                       
Query: 124 agttgcgtttgtaagcagtgacgtgtgagtttgcagacaaaggtaaccattatgcctgct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agttgcgtttgtaagcagtgacgtgtgagtttgcagacaaaggtaaccattatgcctgct 383

                                                                       
Query: 184 gaggacccattttttggaaggccccagactcagcacagagagattcaggaattctgaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaggacccattttttggaaggccccagactcagcacagagagattcaggaattctgaaat 443

                                                                       
Query: 244 cttggcaggcaccatgatttttttttaccacttgaaccattcaggtgcctttcctcacct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttggcaggcaccatgatttttttttaccacttgaaccattcaggtgcctttcctcacct 503

                                                                       
Query: 304 ctgcgccagtctgattggctggaatagacctagtccctccctgctccatcgccctccttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgcgccagtctgattggctggaatagacctagtccctccctgctccatcgccctccttg 563

                                                                       
Query: 364 tctgaactaaaatcaagactctttgaggactccttgtgggggtgagcccttcaggaaagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctgaactaaaatcaagactctttgaggactccttgtgggggtgagcccttcaggaaagc 623

                                                                       
Query: 424 catgttgccatccaggctgcattggatcctttaataaacacgtcctagcggcctctacag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 catgttgccatccaggctgcattggatcctttaataaacacgtcctagcggcctctacag 683

                                                                       
Query: 484 actttgatttaaacctgctagccacttccctgtcttctttgctggataagaaattactaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 actttgatttaaacctgctagccacttccctgtcttctttgctggataagaaattactaa 743

                                                                       
Query: 544 tttgccaccttattagcaacatgtaaactaggcacagtgacatatgcctttaatcccagc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttgccaccttattagcaacatgtaaactaggcacagtgacatatgcctttaatcccagc 803

                                                                       
Query: 604 acttgggaggcggaggcaagcagatttctgtggccgaggtcagtttgttctacatagtga 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acttgggaggcggaggcaagcagatttctgtggccgaggtcagtttgttctacatagtga 863

                 
Query: 664 gttcca 669
           ||||||
Sbjct: 864 gttcca 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no506_p14.g1 MSMg01no506_p14.g1 CHROMAT_FILE:
MSMg01no506_p14.g1 PHD_FILE: MSMg01no506_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:21 2005
         (640 letters)



>mm_chr5_151152066_151153105
          Length = 1040

 Score =  891 bits (461), Expect = 0.0
 Identities = 479/485 (98%)
 Strand = Plus / Minus

                                                                       
Query: 155 gggctagggagggcaggcagaaagattcttgacttgaatatgttacaattctctccttta 214
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 839 gggctagggagggcaggcagaaagattcttgacttgaatgtgttacagttctctccttta 780

                                                                       
Query: 215 atgcttattgtctgacacctctgagctaggtgcatgctccacaagatcaggcacacagta 274
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 779 atgcttattgtctgacacctctgagctaggtgcaggctccacaagatcaggcacacagta 720

                                                                       
Query: 275 ggtactcaggagcgatgctgagcacattaattgcttaggagtgggaagtcctgatgtgga 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ggtactcaggagcgatgctgagcacattaattgcttaggagtgggaagtcctgatgtgga 660

                                                                       
Query: 335 ggtggttaagcagaagccccacacacccttgtgcacccactcggaggacgtcactgagag 394
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 659 ggtggttaagcagaagccccacacacccttgtgcgcccactcggaggacgtcactgagag 600

                                                                       
Query: 395 gcgtctctgagtgaacacggtcagaatgtgtaattaatatcaattcatttctcccgttga 454
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gcatctcagagtgaacacggtcagaatgtgtaattaatatcaattcatttctcccgttga 540

                                                                       
Query: 455 ataacaggcacttctcatagaaaaggcctgcagttatacatctattcttttactcttaat 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ataacaggcacttctcatagaaaaggcctgcagttatacatctattcttttactcttaat 480

                                                                       
Query: 515 ccacagctaacaaggagaggtagaaaaaggcaggctgcttacgtaactcagtacgtcaat 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccacagctaacaaggagaggtagaaaaaggcaggctgcttacgtaactcagtacgtcaat 420

                                                                       
Query: 575 acgatgaggcagtggctaaaattttactttttcatttaaaaatagatgcaactatttttt 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acgatgaggcagtggctaaaattttactttttcatttaaaaatagatgcaactatttttt 360

                
Query: 635 ttttt 639
           |||||
Sbjct: 359 ttttt 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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