BAC Information

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BAC

Clone NameMSMg01-507B06
Chromosome5 (Build37)
Map Location 14,996,195 - 14,996,797
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507B06.T7 (MSMg01no507_b06.b1)MSMg01-507B06.TJ (MSMg01no507_b06.g1)
ACCAG581315AG581316
length784779
length of high quality
(start - end)
634 (40 - 673)603 (71 - 673)
definitionCHROMAT_FILE: MSMg01no507_b06.b1 PHD_FILE: MSMg01no507_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:29 2005CHROMAT_FILE: MSMg01no507_b06.g1 PHD_FILE: MSMg01no507_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAA
TTCATTAAATTCTTAGGCAAATGGATGGAACTAGAAAATATCATCCTAAG
TAAGGTAACCAAGTCACAAAAGAACACATATGGTATGCACTAACTGATAA
GTGCATATTAGCCCCAAAGCTGGGAATACCCAAGATGCAATTCACAGACC
ACATGAAGCTCAAGAAGAAGGAAGACCAAAGGGTGGATGCTTCAGTCCTT
CTTAGAAGCAGGAACAAATTACTCGCAGGAGGAAATATGGAGAAAGGGTA
TGAAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCCCCACCTGGTGA
TCCATCCCATAAACAGACACCAAACCCAGACAGTATTGTGAATGCCAAAA
AGTGCTTATTGACAGGAGCCTGAGATCGTTGTCCCCTCAGAGGCTCTGCC
AGAGCCTGACAGATACAGAGGTAGACCCTCGAAGTCAACCATTGGACTGA
GCCCTGGGCCCCCAGTGGAGGAGTTAGAGAAAAGACTGAAAGAGCTGAAG
TGGTTTCCAACCTCATAAGAACAACAATATCAACCAACCAGAGCCCCAGA
GCTTCCAGGGACTAAATCACCAACCAAAGAGTACACAGGGAGGAACCCAT
GGCTCCAGCTGCATATGTAGCAGAGGATGGCCTTGGTGGGAGGAAAGGCT
CTTGGTCCTGTGAAGGCTCGATGCCCCAGTGAGGCAGGAGTGGATGGGTC
TCCTAGAAGCAGAGGGAGCTGATAGGGAATTTCT
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGCAATTCACATCTTATTTCCATAAAACATATAT
GCTGTAGCATACATACATACATACATACATACATACATACATACATACAT
ACATACATATACACATACACACATACACACATACACACACACACACACAC
ATACACACATACACACATACACACATACACACATACAATTGGTTTGTCTG
TTTAGTTTTGGATGGGTTTGAGGTGTCGTTGTTGTTGGTTTGTTTTTGAA
ACAGAGTCTGTCTATGTAGCCTTGGCTGTCATGGAATTTGCTTTGTAAAC
CAGGCTGGCCTCAAATTTAGAGATTCACCTTCTTCTGTCTTCTAAGACCT
AGTAGTCAAGTCTCCACGCCCAGCAGTTTGAATTGTTGGATTAAAGATTT
TGGACATTTGTCTACTTTATCTTTTCTATTAAGATAGAAAGAAGATAGCC
TATTATTCAAAATTACTCGGAAAATTATTTTATAGTCAGTCATGGCTGGA
ATGCAGATATAAAAAAATCAGATTGTTTGGAACTGAAAAAAGAAAAGATA
AAAAGTTTAAGAAACTCTTTAAAAATTTCCCTTTTCAAAACTGGCTGGCC
ATTCATACAGCTCATGAATCTTAAGGTTTAACAATATAAGTGAGTAGCCT
CAGCTTATTTCAGTTTGTCTTAATTTAATTTAGGTTTAATCATGGGTCTA
TAGACTGTACTTTTATCATCGTGGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_b06.g1 MSMg01no507_b06.g1 CHROMAT_FILE:
MSMg01no507_b06.g1 PHD_FILE: MSMg01no507_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:29 2005
         (603 letters)



>mm_chr5_14995997_14996997
          Length = 1001

 Score =  988 bits (511), Expect = 0.0
 Identities = 579/607 (95%), Gaps = 12/607 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   acatcttatttccataaaacatatatgctgtagcatacatacatacatacatacatacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 199 acatcttatttccataaaacatatatgctgtagcatacatacatacacacatacacacat 258

                                                                       
Query: 65  acatacatacatacatacatacatatacacatacacacatacacacatacacacacacac 124
           ||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 259 acacacatacacacatacacacatacacacatacacacatacacacatacacacacacac 318

                                                                       
Query: 125 acacaca------tacacaca--tacacacatacacacatacacacatacaattggtttg 176
           |||||||      ||||||||  |||||||||||||||||||||||| ||||||||||||
Sbjct: 319 acacacacacacatacacacacatacacacatacacacatacacacaaacaattggtttg 378

                                                                       
Query: 177 tctgtttagttttggatgggtttgaggtgtcgttgttgttggtttgtttttgaaacagag 236
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||  
Sbjct: 379 tctgtttagttttggatgggtttgaggtatggttgttgttggtttgtttttgaaacag-- 436

                                                                       
Query: 237 tctgtctatgtagccttggctgtcatggaatttgctttgtaaaccaggctggcctcaaat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tctgtctatgtagccttggctgtcatggaatttgctttgtaaaccaggctggcctcaaat 496

                                                                       
Query: 297 ttagagattcaccttcttctgtcttctaagacctagtagtcaagtctccacgcccagcag 356
           | |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 497 tcagagattcactttcttctgtcttctgagacctagtagtcaagtctcctcgcccagcag 556

                                                                       
Query: 357 tttgaattgttggattaaagattttggacatttgtctactttatcttttctattaagata 416
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 557 tttgaattgttggattaaagattttggacatttttctactttatcttttctattaagata 616

                                                                       
Query: 417 gaaagaagatagcctattattcaaaattactcggaaaattattttatagtcagtcatggc 476
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 617 gaaagaagatagcctattattcaaatttactcagaaaattattttatagtcagtcatggc 676

                                                                       
Query: 477 tggaatgcagatataaaaaaatcagattgtttggaactgaaaaaagaaaagataaaaagt 536
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 677 tggaatgcagatataaaaaaatcagattgtttggaactgaaaaaa--aaagataaaaagt 734

                                                                       
Query: 537 ttaagaaactctttaaaaatttcccttttcaaaactggctggccattcatacagctcatg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttaagaaactctttaaaaatttcccttttcaaaactggctggccattcatacagctcatg 794

                  
Query: 597 aatctta 603
           |||||||
Sbjct: 795 aatctta 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1001
Length adjustment: 10
Effective length of query: 593
Effective length of database: 991
Effective search space:   587663
Effective search space used:   587663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)