BAC Information

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BAC

Clone NameMSMg01-507E03
Chromosome5 (Build37)
Map Location 38,203,407 - 38,203,715
singlet/doubletsinglet
Overlap genenone
Upstream geneMan2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1
Downstream geneMsx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507E03.T7 (MSMg01no507_e03.b1)MSMg01-507E03.TJ (MSMg01no507_e03.g1)
ACCAG581452AG581453
length735729
length of high quality
(start - end)
660 (76 - 735)628 (83 - 710)
definitionCHROMAT_FILE: MSMg01no507_e03.b1 PHD_FILE: MSMg01no507_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:44 2005CHROMAT_FILE: MSMg01no507_e03.g1 PHD_FILE: MSMg01no507_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCACGCAGTATACGTGATTGGAAACCACAGGGACATAGGA
GCTGAATCACAGGGTTTGTACATATGCATGTATATACATGTGCATGCATG
TATATACATGTGCATGCGTGTGTGCATCTGTGTGGAGGCTAGAGGTTGAC
TTTTGGGTGTCTTCCTCTATCACTTTCCACCTGATAATTTCCAAGAACTT
GAAATTCACTGGTTTGGCTAGACCAGTCAGCCAGCGAGGCCCAGGGGTTC
CCCATCTCTCCCCTCCCTCGCAAGCACCATGATCAGAGGCATACACTGCT
GTTCCCTGCTTTCTGTCACTGCTGGAGATTGAACTAGTTCTGATGCTTTT
TAATTTTAATTTTTATTCTTATTTTGTGCATATGGGTGTCTGCCTGCATG
TATATTTATGCACCGTGTGTGTGCAGTATTCACAGAGGTCAGAAGGAGGC
TGTGGGTCCCCACTGGAACCGGAATTGTATCTGGTTATAAGCCTCCAGGT
GGATTCTGAGAACTGAACCCGGATCCTCTGAGAAAGCAGCCAGTGCTCTT
CACCCCTGGGCCACCTCGCCAGCCCCTCTCACACTTTTGGGACCCACACT
ATATACCAAATAAGCCATTTCCCCATCTTATCCCATAGAGGCTTGTGGGC
TAGGGTAAGGGCTAGAGTTTACTGTGAGCAAACCA
AAAGTGAACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACATCCAATATTAG
GCAGTGAAGGAAGCAATCAAAACCAGAAAGCTGGTGAAGTTGGAGTTGAA
TGGGGATGCCATGTTCCAGTCCCAGCAAGCAACAGACCTTGGAAGCCTTG
GCCACATGGTTCTGGCTTTAGAGTCAAGGATAAAAGACAGGGGTTATGGA
ATCTCTCTCTGAGGCTAAGGAAAGCCACTGAGGCCAGATGTGTAGAGCAG
GGGTGTTCCTTCACAGAGACTTAGAAAAGCCATTGTGTGAAGCTATGAAG
GTGAAGCCTGGATTGCTTTGAAGACATCAAGATGTTGGAGATTCCATAAC
TGTGGGACACCTGCCTAGGAGCACTCAAAGGAGAGAAGCTTGCTGTGATC
AACAAAGCTGAGAGAAGTTGGAAATCTAGAGAACGCTTTGACATCAGACT
TGGAGATGCAGAGTTTGGGGTTTGCCCAGCTGCTTTCTGTCTTGTTTTGG
TCTCGTATTTCCTCGCTGGGCTCCCCTTTCTTCCCTTTTGGTATGGGAAT
ATATACCCTGTACCATTATATGTTGAAAGTATGGCATCTGATTTTTTTTT
TTAGTTATGATTTTATAGGGTAATTACTGCATGACTCTAAGAAGAGACTT
TGAATTTAGGACTTTTAAACAAGTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_e03.b1 MSMg01no507_e03.b1 CHROMAT_FILE:
MSMg01no507_e03.b1 PHD_FILE: MSMg01no507_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:44 2005
         (660 letters)



>mm_chr5_38202656_38203715
          Length = 1060

 Score =  557 bits (288), Expect = e-162
 Identities = 306/316 (96%), Gaps = 7/316 (2%)
 Strand = Plus / Minus

                                                                        
Query: 345  tattttgtgcatatgggtgtctgcctgcatgtatatttatgcaccgtgtgtgtgcagtat 404
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1060 tattttgtgcatatgggtgtctgcctgcatgtatatttatgcaccgtgtgtgtgcactat 1001

                                                                        
Query: 405  tcacagaggtcagaaggaggctgtgggtccccactggaaccggaattgtatctggttata 464
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 tcacagaggccagaaggaggctgtgggtccccactggaaccggaattgtatctggttata 941

                                                                        
Query: 465  agcctccaggtggattctgagaactgaacccggatcctctgagaaagcagccagtgctct 524
            |||||||||||||||||||||||||       ||||||||||||||||||||||||||||
Sbjct: 940  agcctccaggtggattctgagaact-------gatcctctgagaaagcagccagtgctct 888

                                                                        
Query: 525  tcacccctgggccacctcgccagcccctctcacacttttgggacccacactatataccaa 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  tcacccctgggccacctcgccagcccctctcacacttttgggacccacactatataccaa 828

                                                                        
Query: 585  ataagccatttccccatcttatcccatagaggcttgtgggctagggtaagggctagagtt 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 827  ataagccatttccccatcttatcccatagaggcttgtgggctagggtaagggctacagtt 768

                            
Query: 645  tactgtgagcaaacca 660
            ||||||||||||||||
Sbjct: 767  tactgtgagcaaacca 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)