Query= MSMg01no507_f01.b1 MSMg01no507_f01.b1 CHROMAT_FILE:
MSMg01no507_f01.b1 PHD_FILE: MSMg01no507_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:49 2005
(604 letters)
>mm_chr5_60615202_60616205
Length = 1004
Score = 1089 bits (563), Expect = 0.0
Identities = 590/599 (98%), Gaps = 2/599 (0%)
Strand = Plus / Plus
Query: 7 gaattctttaaaga-attctcattggtgtgtttaattggatacccaatgggcatgaatga 65
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 207 gaattctttaaagaga-tctcattggtgtgtttaattggatacccaatgggcatgaatta 265
Query: 66 gttttagttgttcttcattgcacttagaaactcctatttttttagaacatttttaactga 125
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 266 gttttagttgttcttcattgcacttagaaactcctattttgttagaacatttttaactga 325
Query: 126 tgaaagcactaacaatggccccacccacagtaaaatttccctcccttttgaattttccat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgaaagcactaacaatggccccacccacagtaaaatttccctcccttttgaattttccat 385
Query: 186 tgtcagtaccattgcaaaatctagttccaattgtgccaatttcttcccacttccagacct 245
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 386 tgtcagtaccattgcaaaatctagttccaattgtgccaatttcttctcacttccagacct 445
Query: 246 ggcattggtcagcctttttatttatgtgttttggcattatttctatctaagaaagctgga 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggcattggtcagcctttttatttatgtgttttggcattatttctatctaagaaagctgga 505
Query: 306 aattggcttgtctctcttaaatccatagcttctgaaagatctcataatgaacccatccaa 365
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 506 aattggcttgtctctcttaaatccttagcttctgaaagatctcataatgaacccatccaa 565
Query: 366 aaattcttactttccattattttgattagaaaaattcacagaaaggggtaaaataaaact 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaattcttactttccattattttgattagaaaaattcacagaaaggggtaaaataaaacc 625
Query: 426 gtgaatgttccttttctcaaggtaaaaatgtcaccagatgagagcatgaggttttattcg 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtgaatgttccttttctcaaggtaaaaatgtcaccagatgagagcatgaggttttattca 685
Query: 486 gctttagtgtcctgaaatgttatttagttttgatgccaaattttataaatcatagagaca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gctttagtgtcctgaaatgttatttagttttgatgccaaattttataaatcatagagaca 745
Query: 546 tttatcattccattccaatagatcagcagaaacctcagggagaagcttttacattattg 604
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 746 tttatcattccattccaatagatcaccagaaacctcagggagaagcttttacattattg 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_f01.g1 MSMg01no507_f01.g1 CHROMAT_FILE:
MSMg01no507_f01.g1 PHD_FILE: MSMg01no507_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:49 2005
(642 letters)
>mm_chr5_60756850_60757892
Length = 1043
Score = 1135 bits (587), Expect = 0.0
Identities = 629/643 (97%), Gaps = 1/643 (0%)
Strand = Plus / Minus
Query: 1 tctagaacaggtgttagtgaccattgtgaaccactctgtttgtgctggttattaaagtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tctagaacaggtgttagtgaccattgtgaaccactctgtttgtgctggttattaaagtac 779
Query: 61 atttcagtgggagcactgaactagtagacctgttttacattgagtgttataaataaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 778 atttcagtgggagcactgaactagtagacctgttttacattgagtgttataaacaaatat 719
Query: 121 tgaattcatttaataacaggtcattggctaaaatattcattttgatgaattagatttatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tgaattcatttaataacaggtcattggctaaaatattcattttgatgaattagatttatt 659
Query: 181 aatattttattaatcatataatcttttttgaattcatattatatcttttctccttagtta 240
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 658 aatattttattaatcatataatctttttagaattcatattatatcttttccccttagtta 599
Query: 241 tcattatcaatcctgga-tttgtctgatgaaaatataaaatcatgaattatttagacttt 299
|||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 598 tcataatcaatcctggactttgtctgatgaaaatacaaaatcatgaattatttagacttt 539
Query: 300 acattttcattattttattttggcatagataagacaaatcatagttaatttttcactagt 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 538 acattttcattattttattttggcatagaaaagacaaatcatagttaatttttcactagt 479
Query: 360 gatattgtcatgcgaaggagatttgactgtagggatttttaaaaacaacaaatgggtgct 419
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gatattgccatgccaaggagatttgactgtagggatttttaaaaacaacaaatgggtgct 419
Query: 420 gaagagatggcttagtgagtaggagtactgatggattttcagaaaacctgtattccatcc 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaagagatggcttagtgagtaggggtactgatggattttcagaaaacctgtattccatcc 359
Query: 480 tcagcatatacacaatgactcacaatcatcactaacaccagttctagggaataagaaatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcagcatatacacaatgactcacaatcatcactaacaccagttctagggaataagaaatt 299
Query: 540 caacacagcctctgtgcttattatatgtacatagaatacatccacagacagctaaagcac 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 298 caacacagcctctgtgcttattatatgtacatagaatacatacacagacagctaaagcac 239
Query: 600 tcacataacttaaagaaagaaacagagagagagagaaagagag 642
|||||||||||||||||||| | ||||| ||||||||||||||
Sbjct: 238 tcacataacttaaagaaagagagagagaaagagagaaagagag 196
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space: 652856
Effective search space used: 652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
