CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAA
TTCTTTTATTTATCTGTTACCACTTTCTCAGTGATTGATTTTCACGAAAC
TGGTTGAATTACTTTTGTTGACAAGACATTGATGTTCAGTTACATAGATT
TAAGTAGATTTTTATCTTGGTTCTATGTAACTTTTGTTGTAAAATATGTT
GGCTTTGTTTTTGAGGCCATTTTTCTCTGACCATCAAAGGAAAACATAAA
GATCCTTGGATACTTGTTAACAAAAGCCTGATGTTGGCTTGTGATTAGCA
GTAGTTGTAAGAAATATGCAGAATACCGTGCATATTGTTTTGATAGTTAT
TAGTGTTAAGGCCTAAGATGATAACAGAAAAAGGAAGCACAGAATAATTC
GGAGGTTAGAAAAACAAAACATTGCCTGAAAGACATGAGGGAGAGTGGTA
AATATCTTTGACTACCAGACAAGTGCAAAATCCGGCTATTGTATCAAATA
CATATTCATGAAACCAAAGCAAGTGCACTACTAAAGTCTGTGCCATTAAA
AATGTTTGTGTGTGTGTGTGTGTGTGCGCGCCTGCTTTTCTGTGTGTATG
CCATGTGTGTGCAGTGCAGTGCTGTTGCACTCCAGAAGAAGGTGCGGGAT
CCCCTGGCGCTGGGTTACACATGGCTGTGTGCAGCTCCATGTGCTCTTGC
TCCGACCTGCTGAGCTGCCTTTCCAGACCCATTCTTATGGAGATAGTTAA
TTTTTAGCATCTCTAAAAATTAAGAGA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGTCTATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAA
ACACATGAAACTTAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCC
TCCTTAGAAGTGGGAACAAACACCCCTG

Query= MSMg01no507_h06.b1 MSMg01no507_h06.b1 CHROMAT_FILE:
MSMg01no507_h06.b1 PHD_FILE: MSMg01no507_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:00 2005
         (666 letters)



>mm_chr5_106307969_106309032
          Length = 1064

 Score = 1164 bits (602), Expect = 0.0
 Identities = 643/664 (96%), Gaps = 14/664 (2%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcttttatttatctgttaccactttctcagtgattgattttcacgaaactggttga 67
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 208 gaattcttttatttatctgttaccactttctcagtgattgattttcacgaaactggctga 267

                                                                       
Query: 68  attacttttgttgacaagacattgatgttcagttacatagatttaagtagatttttatct 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 attacttttgttgacaagacattgatgttcagttacatagatttaagtagatttttatct 327

                                                                       
Query: 128 tggttctatgtaacttttgttgtaaaatatgttggctttgtttttgaggccatttttctc 187
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 328 tggttctatgcaacttttgttgtaaaatgtgttggctttgtttttgaggccatttttctc 387

                                                                       
Query: 188 tgaccatcaaaggaaaacataaagatccttggatacttgttaacaaaagcctgatgttgg 247
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 388 tgaccatcaaaggaaaacataaagagccttggatacttgttaacaaaagcctgatgttgg 447

                                                                       
Query: 248 cttgtgattagcagtagttgtaagaaatatgcagaataccgtgcatattgttttgatagt 307
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 448 cttgtgattagcagtagttgtaagaaatatgcagaataccatgcatattgttttgatagt 507

                                                                       
Query: 308 tattagtgttaaggcctaagatgataacagaaaaaggaagcacagaataattcggaggtt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tattagtgttaaggcctaagatgataacagaaaaaggaagcacagaataattcggaggtt 567

                                                                       
Query: 368 agaaaaacaaaacattgcctgaaagacatgagggagagtggtaaatatctttgactacca 427
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 568 agaaaaacaaaacattgcctgaaagacatgagggag--tggtaaatatctttgactacca 625

                                                                       
Query: 428 gacaagtgcaaaatccggctattgtatcaaatacatattcatgaaaccaaagcaagtgca 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gacaagtgcaaaatccggctattgtatcaaatacatattcatgaaaccaaagcaagtgca 685

                                                                       
Query: 488 ctactaaagtctgtgccattaaaaatgtttgtgtgtgtgtgtgtgt-----gtgcgcgcc 542
           ||||||||||||||||||||||||||||||||||||| |            |||| ||||
Sbjct: 686 ctactaaagtctgtgccattaaaaatgtttgtgtgtgcg-------cacacgtgcacgcc 738

                                                                       
Query: 543 tgcttttctgtgtgtatgccatgtgtgtgcagtgcagtgctgttgcactccagaagaagg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgcttttctgtgtgtatgccatgtgtgtgcagtgcagtgctgttgcactccagaagaagg 798

                                                                       
Query: 603 tgcgggatcccctggcgctgggttacacatggctgtgtgcagctccatgtgctcttgctc 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tgcgggatcccctggcgctgggttacacatggctgtgtgcagctccatgtgctcttgctc 858

               
Query: 663 cgac 666
           ||||
Sbjct: 859 cgac 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1064
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1054
Effective search space:   691424
Effective search space used:   691424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)