BAC Information

Click to search

BAC

Clone NameMSMg01-507I07
Chromosome5 (Build37)
Map Location 146,932,990 - 147,149,990
singlet/doubletdoublet
Overlap geneLOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8
Upstream geneCpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449
Downstream geneWasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507I07.T7 (MSMg01no507_i07.b1)MSMg01-507I07.TJ (MSMg01no507_i07.g1)
ACCAG581649AG581650
length773778
length of high quality
(start - end)		677 (74 - 750)617 (77 - 693)
definitionCHROMAT_FILE: MSMg01no507_i07.b1 PHD_FILE: MSMg01no507_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:05 2005CHROMAT_FILE: MSMg01no507_i07.g1 PHD_FILE: MSMg01no507_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(147,149,315 - 147,149,990)(146,932,990 - 146,933,606)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAATCCGCGGAA
TTCCTTGGGGAGGTGCTAAGTTAGCAGAAAAGCAGGGAGCCTGTAAACAC
CACCCAGCCAGCTTCCCTTCAGCACGGGAACAGATGGCAGTCTGTGGCAG
AGCACCCACAGAAACACTCAGCTTGGCTTGTGTTTTGAGGTCAGGTTCTA
CCAAAAAGACATATTGTGGCTTTAAACACTGGTGTGCAAGATGCTCACAA
TACGGAGGCTCGGGCTGAGGCTGTAGAAAGACTCGCGCTGCGAGCATATG
CATATTGTGGGGGATGCCTGGCACTCTTTTTATTTACATTGTTCTTCTTT
TGACTTTCCTTTGAATACTTAGCAGCTGAATTCAGTGACATTGCTGAGCA
TCTATAGGATAAGGCATGACTGAGAAAAGGACAGCAATGAAGCCAGTTGG
CATGTGTGGTGTCCTCCGAGGACTGGGCGGCTGTGGGAACTCCGTCTCAA
GTCTCCTAACTCTCCAGAGAGGCTAGGAGAAGGACCCAGTACTCTGTGTC
GATGAGAAAGCAAAGGGCTTAGATCCCATTGTTCTCTCCCTGGATCCCCT
GCTGCAGACAGACCCTTCTGCCTTCCAAAGAACTGTCAGAATCCAGAACA
TGGTGGGTGACTGCATCCTCCCTGCTTCCTCCTCCTGTAGAGTCCTCTAG
GAAGAGTTAGCACTTGGATTCTTCCTCAAGCCAAGCCAGGAGCAGTGGCT
TGGTAAAAGAGCTCTCCACTACN

CATGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCGNAATCAGGGCCTGAGACAATTTTATGTTGGTC
TATATTATTTCTGTTACCATGCTGATTTAGAGTTAAAAAGGTGAGTTTAA
CTCTTTAAACCTTATTCTTATATTATATTTTTAAGTCATAAAAAGTTATT
TTTGATTTGCTGAAATTTGCAAGTTAATCTTAAGGTAGGATACATTTAAA
TTCTATGGAGAGTTTTAGCTCCTAGATCACCACTATAGTTGAGCCCATTC
AGGTCAAGTCTTCAGGAGGACAAATACTATGCTTGCTTTTCTAGCATTTA
TTCTTAGCTTCCAAGGATGGGATGATTAGGACATTCTGATTCTACTGGGT
TTTCAATAACACTTTAGTCTGATGCTCTTCAGTTATGAATGTGGGAATTT
GCCAATGGATAAATCTTCTAGGCATAGGAACAGGAAGGGGAACAAAGTCA
TCATGGAGACACAGAAGTGTCACATTTAAGATAACTGGAGCTTGCAAGAG
CATCTCCCCCATGCCAGGTGCGCTATGGGGGTCTCAAAACTAGATTATTG
TTTTGTCTGTCTAAATTCCTGTTTATGACTTAAATTCTCTAGTAATAAAA
TACTAAAATAAATGTGTAGGTAAAGATATACAACACCCCTAAGGCACAGA
CCAAAGAAGAATTTCCATCCATTCATTTTTACAGAAATAAACTCACTGAT
AAAGAGAATTCATATTCTAAATACACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_i07.b1 MSMg01no507_i07.b1 CHROMAT_FILE:
MSMg01no507_i07.b1 PHD_FILE: MSMg01no507_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:05 2005
         (677 letters)



>mm_chr5_147149115_147150191
          Length = 1077

 Score = 1193 bits (617), Expect = 0.0
 Identities = 662/681 (97%), Gaps = 10/681 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagaaaagcagggagcctgtaaacaccacccagccagcttcccttcagcacgggaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gcagaaaagcagggagcctgtaaacaccacccagccagcttcccttcagcacgggaacag 817

                                                                       
Query: 61  atggcagtctgtggcagagcacccacagaaacactcagcttggcttgtgttttgaggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 atggcagtctgtggcagagcacccacagaaacactcagcttggcttgtgttttgaggtca 757

                                                                       
Query: 121 ggttctaccaaaaagacatattgtggctttaaacactggtgtgcaagatgctcacaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 756 ggttctaccaaaaagacatattgtggctttaaacactggtgtgcaagatgctcgcaatac 697

                                                                       
Query: 181 ggaggctcgggctgaggctgtagaaagactcgcgctgcgagcatatgcatattgtggggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ggaggctcgggctgaggctgtagaaagactcgcgctgcgagcatatgcatattgtggggg 637

                                                                       
Query: 241 atgcctggcactc----tttttatttacattgttcttcttttgactttcctttgaatact 296
           |||||||||||||        |||||||||||||||||||||||||||||||||||||||
Sbjct: 636 atgcctggcactccccg----tatttacattgttcttcttttgactttcctttgaatact 581

                                                                       
Query: 297 tagcagctgaattcagtgacattgctgagcatctataggataaggcatgactgagaaaag 356
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tagcagctgaattcagtgacgttgctgagcatctataggataaggcatgactgagaaaag 521

                                                                       
Query: 357 gacagcaatgaagccagttggcatgtgtggtgtcctccgaggactgggcggctgtgggaa 416
           ||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||
Sbjct: 520 gacagcaatgaagccagttggcatgtgtggtgtcctgtgaagactgggcggctgtgggaa 461

                                                                       
Query: 417 ctccgtctcaagtctcctaactctccagagaggctaggagaaggacccagtactctgtgt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctccgtctcaagtctcctaactctccagagaggctaggagaaggacccagtactctgtgt 401

                                                                       
Query: 477 cgatgagaaagcaaagggcttagatcccattgttctctccctggatcccctgctgcagac 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cgatgagaaagcaaagggcttagatcccattgttctctccctggatcccctgctgcagac 341

                                                                       
Query: 537 agacccttctgccttccaaagaactgtcagaatcc-agaacatggtgggtgactgcatcc 595
           ||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||
Sbjct: 340 agacccttctgccttccaaagaactgtcagaatccta-accatggcgggtgactgcatcc 282

                                                                       
Query: 596 tccctgcttcctcctcctgtagagtcctctaggaagagttagcacttggattcttcctca 655
           |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 281 tccctgtttcctcctcctgtagagtcctctaggaagagttagcactcggattcttcctca 222

                                
Query: 656 agccaagccaggagcagtggc 676
           |||||||||||||||||||||
Sbjct: 221 agccaagccaggagcagtggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_i07.g1 MSMg01no507_i07.g1 CHROMAT_FILE:
MSMg01no507_i07.g1 PHD_FILE: MSMg01no507_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:06 2005
         (617 letters)



>mm_chr5_146932790_146933806
          Length = 1017

 Score = 1185 bits (613), Expect = 0.0
 Identities = 616/617 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctgagacaattttatgttggtctatattatttctgttaccatgctgatttagagttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctgagacaattttatgttggtctatattatttctgttaccatgctgatttagagttaa 260

                                                                       
Query: 61  aaaggtgagtttaactctttaaaccttattcttatattatatttttaagtcataaaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggtgagtttaactctttaaaccttattcttatattatatttttaagtcataaaaagt 320

                                                                       
Query: 121 tatttttgatttgctgaaatttgcaagttaatcttaaggtaggatacatttaaattctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttttgatttgctgaaatttgcaagttaatcttaaggtaggatacatttaaattctat 380

                                                                       
Query: 181 ggagagttttagctcctagatcaccactatagttgagcccattcaggtcaagtcttcagg 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ggagagttttagctcctagatcaccactataattgagcccattcaggtcaagtcttcagg 440

                                                                       
Query: 241 aggacaaatactatgcttgcttttctagcatttattcttagcttccaaggatgggatgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacaaatactatgcttgcttttctagcatttattcttagcttccaaggatgggatgat 500

                                                                       
Query: 301 taggacattctgattctactgggttttcaataacactttagtctgatgctcttcagttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggacattctgattctactgggttttcaataacactttagtctgatgctcttcagttat 560

                                                                       
Query: 361 gaatgtgggaatttgccaatggataaatcttctaggcataggaacaggaaggggaacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatgtgggaatttgccaatggataaatcttctaggcataggaacaggaaggggaacaaa 620

                                                                       
Query: 421 gtcatcatggagacacagaagtgtcacatttaagataactggagcttgcaagagcatctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcatcatggagacacagaagtgtcacatttaagataactggagcttgcaagagcatctc 680

                                                                       
Query: 481 ccccatgccaggtgcgctatgggggtctcaaaactagattattgttttgtctgtctaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccatgccaggtgcgctatgggggtctcaaaactagattattgttttgtctgtctaaat 740

                                                                       
Query: 541 tcctgtttatgacttaaattctctagtaataaaatactaaaataaatgtgtaggtaaaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctgtttatgacttaaattctctagtaataaaatactaaaataaatgtgtaggtaaaga 800

                            
Query: 601 tatacaacacccctaag 617
           |||||||||||||||||
Sbjct: 801 tatacaacacccctaag 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |