NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCCTTTCCTAAACATAATAAAAGCAATCTACAGCAAAC
CAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACAT
AGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGAT
ATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAA
CCTGATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACA
AGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGG
CGTGACTCTAACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGT
CTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCA
TGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAA
AGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCT
TCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAA
C

NNNNNCCAATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATTGCCTTTTGGTGTTC
TTGGTAGCTTTTATAATGCTTGTATGAGATAGAACATTAGATTATTAGGA
AGACTTTAAAGGACACATAATAATTTGTTTCAATCAGCCAACTTTGTACA
GGTATGAATTATAGAGTTTAGAAATACACTTTGCCTATAATCACTGTTTG
AACTCTTAAAAGAGCTCTTTAGCATTTATATTTTAGAGATTAAATATGAA
ATCATAAATATTATGTTTACCTTTACTTATAACAGCTGACATTCAAATTA
AAACTTCATTTCAATAGAAATGATTGGTACATTTTTATAGTGTGTTTAGA
ACCCGTGACAGCGCAGGTCATAAGTGATTGGGTAGGTTGCTGTATAAAAC
TTTTATCTTCATAGTGAAAGTATCTTTCTTTCTCTGTAAACATGTTTTAT
ATTGATTCACTCTTTGAAAATAATCATTTTGTTAAGGCTTAATTGTGTAA
ATTAATATATATAGCATTTTTTAAAATTTTATTTTTGTTTTGTGAGATGG
GTCTCCCTCACTGTGTAGACCTGGCTGTTGTAGAACTCCAGATTAGGCTG
GTCCCCAGCTCACAAAGATTCTCATGGAATTCTGGGATTAAAGACATGTA
TCACCATGCCAGGCACTGAATTTTATTTTATATTAATAAAATAATAAAN

Query= MSMg01no507_j12.g1 MSMg01no507_j12.g1 CHROMAT_FILE:
MSMg01no507_j12.g1 PHD_FILE: MSMg01no507_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:11 2005
         (562 letters)



>mm_chr5_42089933_42090894
          Length = 962

 Score = 1079 bits (558), Expect = 0.0
 Identities = 561/562 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagattgccttttggtgttcttggtagcttttataatgcttgtatgagatagaacatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agagattgccttttggtgttcttggtagcttttataatgcttgtatgagatagaacatta 609

                                                                       
Query: 61  gattattaggaagactttaaaggacacataataatttgtttcaatcagccaactttgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gattattaggaagactttaaaggacacataataatttgtttcaatcagccaactttgtac 549

                                                                       
Query: 121 aggtatgaattatagagtttagaaatacactttgcctataatcactgtttgaactcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aggtatgaattatagagtttagaaatacactttgcctataatcactgtttgaactcttaa 489

                                                                       
Query: 181 aagagctctttagcatttatattttagagattaaatatgaaatcataaatattatgttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagagctctttagcatttatattttagagattaaatatgaaatcataaatattatgttta 429

                                                                       
Query: 241 cctttacttataacagctgacattcaaattaaaacttcatttcaatagaaatgattggta 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cctttacatataacagctgacattcaaattaaaacttcatttcaatagaaatgattggta 369

                                                                       
Query: 301 catttttatagtgtgtttagaacccgtgacagcgcaggtcataagtgattgggtaggttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 catttttatagtgtgtttagaacccgtgacagcgcaggtcataagtgattgggtaggttg 309

                                                                       
Query: 361 ctgtataaaacttttatcttcatagtgaaagtatctttctttctctgtaaacatgtttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctgtataaaacttttatcttcatagtgaaagtatctttctttctctgtaaacatgtttta 249

                                                                       
Query: 421 tattgattcactctttgaaaataatcattttgttaaggcttaattgtgtaaattaatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tattgattcactctttgaaaataatcattttgttaaggcttaattgtgtaaattaatata 189

                                                                       
Query: 481 tatagcattttttaaaattttatttttgttttgtgagatgggtctccctcactgtgtaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tatagcattttttaaaattttatttttgttttgtgagatgggtctccctcactgtgtaga 129

                                 
Query: 541 cctggctgttgtagaactccag 562
           ||||||||||||||||||||||
Sbjct: 128 cctggctgttgtagaactccag 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)