Query= MSMg01no507_k06.b1 MSMg01no507_k06.b1 CHROMAT_FILE:
MSMg01no507_k06.b1 PHD_FILE: MSMg01no507_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:15 2005
(711 letters)
>mm_chr5_134904203_134905313
Length = 1111
Score = 1319 bits (682), Expect = 0.0
Identities = 700/706 (99%)
Strand = Plus / Plus
Query: 6 gaattctggaggtccttactttgagtctcagcaccacaagtttgtcccgtggcgcatttc 65
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctggaggtcctgagtttgagtctcagcaccacaagtttgtcccgtggcgcatttc 265
Query: 66 ataacggacccagcccgtttctagttggtaatcagggagcccaaaggctgtgttgtgagc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ataacggacccagcccgtttctagttggtaatcagggagcccaaaggctgtgttgtgagc 325
Query: 126 tgcccttgatgacaaggtggctgggtcttcgctgtaccgggttctgcaatgaacacatag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgcccttgatgacaaggtggctgggtcttcgctgtaccgggttctgcaatgaacacatag 385
Query: 186 cacagatctctatctacagtcatgagcagtatgcactgacactaaatgctggataaaggt 245
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cacagatctctgtctacagtcatgagcagtatgcactgacactaaatgctggataaaggt 445
Query: 246 ctgacggccatcttcttgggtctgcacaaggctcacgaccctgatattccaggaagataa 305
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 446 ctgacggccatcttcttgggtctgcacaaggctcacaaccctgatattccaggaagataa 505
Query: 306 cgacagtcttaccgagacctacacacctatgttcactgcagcagcgttcaccagagccta 365
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cgacagtctcaccgagacctacacacctatgttcactgcagcagcgttcaccagagccta 565
Query: 366 aaggaagaaacaagccaggcagccttgatggatggagtagctcagaggactcggtggtca 425
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 566 aaggaagaaacaagccaggcagccttgatggatggagtagctcagaggacttggtggtca 625
Query: 426 ggagcacctgtttttcttacagaggacctgggttctgttccccgttcccacatggtggct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggagcacctgtttttcttacagaggacctgggttctgttccccgttcccacatggtggct 685
Query: 486 cccaactatctgcaactccagttccaggggataagataccttcttttgacttctgaaggc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cccaactatctgcaactccagttccaggggataagataccttcttttgacttctgaaggc 745
Query: 546 accaggcacacatgttgtgagcatacacacatgcaggcaaaggattcccattgccatgga 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 accaggcacacatgttgtgagcatacacacatgcaggcaaaggattcccattgccatgga 805
Query: 606 aaatgtctcaaggtgttatctcaacactcaagaaaaaaggcagaaagattgctgcaagct 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aaatgtctcaaggtgttatctcaacactcaagaaaaaaggcagaaagattgctgcaagct 865
Query: 666 ccaggctagcttgggctacatagcaaggcccactgtaacctaagat 711
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ccaggctagcttgggctacatagcaaggcccactgtaacctaagat 911
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space: 771801
Effective search space used: 771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no507_k06.g1 MSMg01no507_k06.g1 CHROMAT_FILE:
MSMg01no507_k06.g1 PHD_FILE: MSMg01no507_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:15 2005
(246 letters)
>mm_chr5_135066968_135067613
Length = 646
Score = 371 bits (192), Expect = e-107
Identities = 221/246 (89%), Gaps = 24/246 (9%)
Strand = Plus / Minus
Query: 1 aattgtcctctgacctttacacacgctgcagcaggcttacacacacacacacacacacac 60
||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aattgtcctctgacctttacacacgctgcagcaggctt---------------------- 530
Query: 61 acacacacacacacacacacacactcacagagtgaaggacacctgtatcaagtggctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 --acacacacacacacacacacactcacagagtgaaggacacctgtatcaagtggctcac 472
Query: 121 aactgcctgtaccctaattccagggcacgcatattcagacagcagacagacataatcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aactgcctgtaccctaattccagggcacgcatattcagacagcagacagacataatcaaa 412
Query: 181 cctgaaaacaaatgagaaaagtaagtacatgaaaagggagccgttgggggctggagagat 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cctgaaaccaaatgagaaaagtaagtacatgaaaagggagccgttgggggctggagagat 352
Query: 241 ggctca 246
||||||
Sbjct: 351 ggctca 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
