Query= MSMg01no507_m20.b1 MSMg01no507_m20.b1 CHROMAT_FILE:
MSMg01no507_m20.b1 PHD_FILE: MSMg01no507_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:28 2005
(677 letters)
>mm_chr5_14210005_14211082
Length = 1078
Score = 764 bits (395), Expect = 0.0
Identities = 421/437 (96%), Gaps = 13/437 (2%)
Strand = Plus / Minus
Query: 242 aagaataatttagataaatagggacaaggaaatggctgagataatctgacctagatctta 301
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1049 aagaataatttagataaatagggacaaggaaatggctgagatgatctgacctagatctta 990
Query: 302 acatctacatggtagaaagaatgattaaacacctgtgtattgatctctgcacgcgcacgc 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 989 acatctacatggtagaaagaatgattaaacacctgtgtattgatctctgcatgcgcacgc 930
Query: 362 atgcgcacacacgtacagagacagagagacagagacagacagacagacagacagacagac 421
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 929 atgcgcacacacgtacagagacagagagacag------------agacagacagacagac 882
Query: 422 agagaataaatgtaagataagaatttaaataaataactttagattgagtttttgctgagt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 agagaataaatgtaagataagaatttaaataaataactttagattgagtttttgctgagt 822
Query: 482 attgtggataatcaaaaatgtaaaataagcatacaacaaccacacatacccataaaattt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 attgtggataatcaaaaatgtaaaataagcatacaacaaccacacatacccataaaattt 762
Query: 542 tctaagttatttcatatagtgagatagaaaattggcatattttaaaatggttgatttttt 601
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 761 tctaagttatttcatatagtgagatagaaaattggcatattttaaaatagttgatttttt 702
Query: 602 -ggctatgcttttatacaaaccattataaagttatatttcctgaatgctaaatgccacca 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tggctatgcttttatacaaaccattataaagttatatttcctgaatgctaaatgccacca 642
Query: 661 taaaaatcattctgttt 677
|||||||||||||||||
Sbjct: 641 taaaaatcattctgttt 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1078
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1068
Effective search space: 712356
Effective search space used: 712356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_m20.g1 MSMg01no507_m20.g1 CHROMAT_FILE:
MSMg01no507_m20.g1 PHD_FILE: MSMg01no507_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:28 2005
(560 letters)
>mm_chr5_14135000_14135959
Length = 960
Score = 1075 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 1 aaagaccagaaagccagagtattatataaaatattaaatacttaccatgtatgtaagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaccagaaagccagagtattatataaaatattaaatacttaccatgtatgtaagata 260
Query: 61 agaactcaaggaatcttaaaagactatttactgtatacccttatgtatatttgaaattat 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 agaactcaaggaatcttaaaagactatttactgtatacccttatgtacatttgaaattat 320
Query: 121 tttattgcatttgaaagtagggttaattaaaatttgtcgttcactgaaatgccttgttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattgcatttgaaagtagggttaattaaaatttgtcgttcactgaaatgccttgttgt 380
Query: 181 taccttcaacttgtgacaaagaatttaaaattcaaggaatgcatgacaaggctagcattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccttcaacttgtgacaaagaatttaaaattcaaggaatgcatgacaaggctagcattg 440
Query: 241 tccattaagaaaaagagcacgtacaaatgatggcattttcattattacatcttttaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccattaagaaaaagagcacgtacaaatgatggcattttcattattacatcttttaaaaa 500
Query: 301 gctaattgatagtcttttggctttttgcacagtttgggatgcatgtatgtgaagcaagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctaattgatagtcttttggctttttgcacagtttgggatgcatgtatgtgaagcaagct 560
Query: 361 ctctgttgataaactgcattctcaacacatcaattctttccaataaaaaaaaaacttcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgttgataaactgcattctcaacacatcaattctttccaataaaaaaaaaacttcat 620
Query: 421 ctttttcagcattactggctgttagtactcatctgtcatgtctgtcaaaatcatcaaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttttcagcattactggctgttagtactcatctgtcatgtctgtcaaaatcatcaaagg 680
Query: 481 gtgctgcaaaaaatattcccattttaaatgtgatgttgaagtttttgatggctatttcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgctgcaaaaaatattcccattttaaatgtgatgttgaagtttttgatggctatttcca 740
Query: 541 tatattattttttaaaataa 560
||||||||||||||||||||
Sbjct: 741 tatattattttttaaaataa 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
