Query= MSMg01no507_m22.b1 MSMg01no507_m22.b1 CHROMAT_FILE:
MSMg01no507_m22.b1 PHD_FILE: MSMg01no507_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:28 2005
(683 letters)
>mm_chr5_35531378_35532461
Length = 1084
Score = 1222 bits (632), Expect = 0.0
Identities = 668/680 (98%), Gaps = 3/680 (0%)
Strand = Plus / Minus
Query: 6 ggaattccctctgtattccaggcctcccttgaattcacagagat-ccgcctgcatctccc 64
||||||||||||||| |||||||| ||||||| |||||||||| || ||||||||||||
Sbjct: 1067 ggaattccctctgtagaccaggccttccttgaactcacagagatgcc-cctgcatctccc 1009
Query: 65 ctgagtgctgagattaaaggcgagcgccgccattgcccagcttgtgttatttaagaggcc 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1008 ctgagtgctgagattaaaggcgagcgccgccattgcccagcttgtgttttttaagaggcc 949
Query: 125 tgagtgcttacaaattttgccatctgcagagtcctggaactcttccccgtagacaccaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 tgagtgcttacaaattttgccatctgcagagtcctggaactcttccccgtagacaccaag 889
Query: 185 ggactaagtacattactgaactatagtcaccaggttggcctccaagggtgacagcgtgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ggactaagtacattactgaactatagtcaccaggttggcctccaagggtgacagcgtgag 829
Query: 245 gacacagacaaatgtcacgctggggaagccacactggtctcagtgtttctacccattaaa 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 828 gacacagacaaatgtcacgctggggaagccacactggtctcagtgtttctacccatgaaa 769
Query: 305 atgctgggatg-gggtggggctcttccctgctctgagggttggttgctcctctgcagaag 363
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atgctgggatgaggttggggctcttccctgctctgagggttggttgctcctctgcagaag 709
Query: 364 gaaagttggggacagggtgaaataatgtaggcgagcagcctgcacagtactgggacattt 423
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 708 gaaagttggggacagggtgaaataatgtaggcgagcagcctgcacagtgctgggacattt 649
Query: 424 atgccacaggcatcgcttggggcccggcgctcagggcagcttgccaagtgcatttgtcaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atgccacaggcatcgcttggggcccggcgctcagggcagcttgccaagtgcatttgtcaa 589
Query: 484 ggaaaaggaggctcagctactcagaggctcgtgatgacccagaagcatgctaaggccctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggaaaaggaggctcagctactcagaggctcgtgatgacccagaagcatgctaaggccctg 529
Query: 544 ccaacaatgaagggacagggaagggagccaaggccaacagcctggctgagcagagcagcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ccaacaatgaagggacagggaagggagccaaggccaacagcctggctgagcagagcagcc 469
Query: 604 ctgagagacgctactgtggctagaggtccccagaaggaagcctcagtctcccttccagca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ctgagagacgctactgtggctagaggtccccagaaggaagcctcagtctcccttccagca 409
Query: 664 gccctggagtgtctggggat 683
||||||||| ||||||||||
Sbjct: 408 gccctggagagtctggggat 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1084
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1074
Effective search space: 722802
Effective search space used: 722802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_m22.g1 MSMg01no507_m22.g1 CHROMAT_FILE:
MSMg01no507_m22.g1 PHD_FILE: MSMg01no507_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:28 2005
(454 letters)
>mm_chr5_35356175_35357027
Length = 853
Score = 833 bits (431), Expect = 0.0
Identities = 448/454 (98%), Gaps = 1/454 (0%)
Strand = Plus / Plus
Query: 1 ctgggaactgtggccagaaagagcctgtggtgcctgggtgaagtcccggcttcagaaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggaactgtggccagaaagagcctgtggtgcctgggtgaagtcccggcttcagaaacc 260
Query: 61 atggaggactcaccagttctgcctctctcccctctgcttgcccactggtttatgccangg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 atggaggactcaccagttctgcctctctcccctctgcttgcccactggtttatgccaggg 320
Query: 121 ggcagcagcttgactttctttccgaaggtggcgggctccccgccccttcacgcttctgag 180
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct: 321 ggcagcagcttgactttctttccgaagctggcgggctccccgccccttcaggcttctcag 380
Query: 181 aggtgtgctgcgggggccacagagtttgctggaattggaagtgcaggctggtttttccgt 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 aggtgtgctgcgggggccacagagtttgctggaattgga-gtgcaggctggtttttccgt 439
Query: 241 gagtgcatgccctcaacatttcatagctttaggtcactcctcactgagaatgcagatctc 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagtgcatgccctcgacatttcatagctttaggtcactcctcactgagaatgcagatctc 499
Query: 301 atgtttatgggacttaagattttcaagatgatgtggaaataagacagcatcctgtaacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgtttatgggacttaagattttcaagatgatgtggaaataagacagcatcctgtaacta 559
Query: 361 ttacaaagagccatgcatccccatcccgtgtgttgtccagccctgtttgtggctcccccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttacaaagagccatgcatccccatcccgtgtgttgtccagccctgtttgtggctcccccc 619
Query: 421 cacctgctgtttagtgaactgcagagtggctcct 454
||||||||||||||||||||||||||||||||||
Sbjct: 620 cacctgctgtttagtgaactgcagagtggctcct 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 853
Length adjustment: 10
Effective length of query: 444
Effective length of database: 843
Effective search space: 374292
Effective search space used: 374292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
