Query= MSMg01no508_d23.b1 MSMg01no508_d23.b1 CHROMAT_FILE:
MSMg01no508_d23.b1 PHD_FILE: MSMg01no508_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:06 2005
(567 letters)
>mm_chr5_118193042_118194008
Length = 967
Score = 1073 bits (555), Expect = 0.0
Identities = 564/567 (99%)
Strand = Plus / Minus
Query: 1 accatgggaggacacagtgtgaaggtggctgcctgcaacactctgagtccttgccaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 accatgggaggacacagtgtgaaggtggctgcctgcaacactctgagtccttgccaaagc 724
Query: 61 tggagcgagctggcctctgggtctcagacgtcacccttccaacagatgacaaagtttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tggagcgagctggcctctgggtctcagacgtcacccttccaacagatgacaaagtttctt 664
Query: 121 ttctttataagctgcttggtccattacactttattacagcagcggaagctaagacacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttctttataagctgcttggtccattacactttattacagcagcggaagctaagacacagt 604
Query: 181 ctgtgttcatcaacagaaactagggactcgatgaaggagccacccgacaacacatggtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctgtgttcatcaacagaaactagggactcgatgaaggagccacccgacaacacatggtca 544
Query: 241 catggctgtataaaatgaatagaacacatgacagcagacagcggggcgaagctcaccgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tatggctgtataaaatgaatagaacacatgacagcagacagcggggcgaagctcaccgtg 484
Query: 301 tggaaggagtttcctgagactgttggaagagaccactcttggcctgtgtgctggaagccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tggaaggagtttcctgagactgttggaagagaccactcttggcctgtgtgctggaagccg 424
Query: 361 gaagagcggtgccagtgtctctgtgtatttatgtgtgcctctgagtgtgtctgtctgtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaagagcggtgccagtgtctctgtgtatttatgtgtgcctctgagtgtgtctgtctgtct 364
Query: 421 gtgtgtctctgtatctgtctgtctctctgcatatacctgtctgtgtatcagaagagctgc 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgtgtctttgtatctgtctgtctctctgcatatacctgtctgtgtatcagaagagctgc 304
Query: 481 tttggaaggaaaagctgcatgtttgtatctgagagctgagaacagagctaccctattctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttggaaggaaaagctgcatgtttgtatctgagagctgagaacagagctaccctattctg 244
Query: 541 ccctgatgagatggacacttttgcctg 567
|||||||||||||||||||||||||||
Sbjct: 243 ccctgatgagatggacacttttgcctg 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_d23.g1 MSMg01no508_d23.g1 CHROMAT_FILE:
MSMg01no508_d23.g1 PHD_FILE: MSMg01no508_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:06 2005
(495 letters)
>mm_chr5_118014504_118015398
Length = 895
Score = 636 bits (329), Expect = 0.0
Identities = 423/495 (85%), Gaps = 64/495 (12%)
Strand = Plus / Plus
Query: 1 ccacgcgtgaaatcagtccaaggctggttaagggagctgacacagtgtgagtagctgggt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacgcgtgaaatcagcccaaggctggttaagggagctgacacagtgtgagtagctgggt 260
Query: 61 taccagggtctgatgatattggcaggaaagaggtctgtgtgctcagtactggcttctgtc 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 taccagggtctgatgatattggcaggaaagaggtctgtgtgttcagtactggcttctgtc 320
Query: 121 aaagaggggttttattgctggttgattgatgccagtacccagggacctagatggtggaag 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaggagttttattgctggttgattgatgccagtacccagggacctagatggtggaag 380
Query: 181 gagagagccaatacccacaagttgtcctctgacatccacatgcatgtaggctttcctcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagagccaatacccacaagttgtcctctgacatccacatgcatgtaggctttcctcca 440
Query: 241 tgaaagaaagaatgaaagaaagagagagagagagagagagagagagagagagagagagag 300
||||||||||||
Sbjct: 441 tgaaagaaagaa------------------------------------------------ 452
Query: 301 agagagagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 --------agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 504
Query: 361 agaaagaaagaaagaaagaaaggaaggaaggaaggaaggaagagcagaagagtgggcaag 420
|||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 505 agaaag---gaa-----gaaaggaaggaagaaagaaaggaagagcagaagagtgggcaag 556
Query: 421 aacggtccttaaactatttaggtgtatttattgatgggtatgttggtgcatgcctataat 480
|||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct: 557 aacggtccttaaactatttaggtgtatttagtgatgggtgtgttggtgcctgcctataat 616
Query: 481 tttggcattcagaac 495
|||||||||||||||
Sbjct: 617 tttggcattcagaac 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
