Query= MSMg01no508_f18.b1 MSMg01no508_f18.b1 CHROMAT_FILE:
MSMg01no508_f18.b1 PHD_FILE: MSMg01no508_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:14 2005
(612 letters)
>mm_chr5_127147313_127148320
Length = 1008
Score = 1058 bits (547), Expect = 0.0
Identities = 574/585 (98%), Gaps = 4/585 (0%)
Strand = Plus / Minus
Query: 28 atatggtggcctgactgcatttttactctggaatggtagaaacaagaacatctgcaaaat 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 atatggtggcctgactgcatttttactctggaatggtagaaacaagaacatctgcaaaat 949
Query: 88 atgctggccaggaagaccagctctatcagtgagctctgggtttgattaatcaagcctgcc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 atgctggccaggaagaccagctctatcagtgagctctgggtttgattaatcaagcctgcc 889
Query: 148 tcaataaataaggtggagtagtgatgaaggatgattcgtgacatcaaccttaggcttccc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tcaataaataaggtggagtagtgatgaaggatgattcgtgacatcaaccttaggcttccc 829
Query: 208 tatgcatgtgcaaacacatatacagaaacatgcacatatacacatattcatatcacacac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tatgcatgtgcaaacacatatacagaaacatgcacatatacacatattcatatcacacac 769
Query: 268 ataagaatagaatcaataaaaacaatgaaatgaatacatcaattctcttatttggccttc 327
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ataagaatagaagcaataaaaacaatgaaatgaatacatcaattctcttatttggccttc 709
Query: 328 caatggccctggtatgcagaaccagctagccactctggcatcaaaaccagcagttgggat 387
||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 708 caatggcccagatatgcagaaccagttagccactctggcatcaaaaccagcagttgggat 649
Query: 388 ccctcctacaatagtccccgggatgcaggatgagctggtcatactgtgtaggggattagc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ccctcctacaatagtccccgggatgcaggatgagctggtcatactgtgtaggggattagc 589
Query: 448 ctaagatgtgtttattatcatcctgccttaccctgcagggcacctaccctgtccccatac 507
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctaagatgtgcttattatcatcctgccttaccctgcagggcacctaccctgtccccatac 529
Query: 508 tgcttgaaaactgagaaaactgagagccccaacctgagagattatgtagtgatagcttat 567
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgcttg----gtgagaaagctgagagccccaacctgagagattatgtagtgatagcttat 473
Query: 568 tccttccatgaaacttatttcagaaatacattcatttaaattatt 612
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tccttccatgaaacttatttcagaaatacattcatttaaattatt 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1008
Length adjustment: 10
Effective length of query: 602
Effective length of database: 998
Effective search space: 600796
Effective search space used: 600796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_f18.g1 MSMg01no508_f18.g1 CHROMAT_FILE:
MSMg01no508_f18.g1 PHD_FILE: MSMg01no508_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:15 2005
(474 letters)
>mm_chr5_127009117_127009991
Length = 875
Score = 781 bits (404), Expect = 0.0
Identities = 464/492 (94%), Gaps = 18/492 (3%)
Strand = Plus / Plus
Query: 1 agggtctgatgtgcgtgtgtgtctgtctaccagatgcatcttttcttctaagatacaaag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 agggtctgatgtgcgtgtgtgtctgtctaccagatgcatcttttcttcgaagatacaaag 260
Query: 61 taatgacctcacattattggatgaaagttaaaagg-ttgttttgtatgtgctctgtctat 119
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 caatgacctcgcattattggatgaaagttaaaaggtttgttttgtatgtgctctgtctat 320
Query: 120 tctgttagcgcaattatatttcgtgttactgaggccaccacggagaatgaacagaaattt 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgttagtgcaattatatttcgtgttactgaggccaccacggagaatgaacagaaattt 380
Query: 180 aggtgcagctacaatgatgtcccatgatagaaatcctcatcattaaaggacatcagtgat 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aggtgcagctacaatgatgtcccatgatagaaatcctcatcgttaaaggacatcagtgat 440
Query: 240 ctcttacccaaagcaggactcggattccgtacattgcatgaccaacaaaggtt---tgtg 296
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct: 441 ctcttacccaaagcaggactcggattccgtacattgcattaccaacaaaggttatttttg 500
Query: 297 -------ca----ttctcatgattggagttgagggcctgacgcatggaaaggaactcgtg 345
|| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaagccaactattctcatgactggagttgagggcctgacgcatggaaaggaactcgtg 560
Query: 346 cctgttgctgcaaatgtgttcaaaccccacagctaggga-gatcataggctcgatgggag 404
|||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 561 cctgttgctgcaaatgcgttcaaaccccacagctacggaagatcataggctcgatgggag 620
Query: 405 gacctataacaagtgatttaccaaatggata--ccaaactgctttctaaatgtttatgct 462
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 gacctataacaagtgatttaccaaatggatataccaaactgctttctaaatgtttatgct 680
Query: 463 tgtagctataga 474
||||||||||||
Sbjct: 681 tgtagctataga 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 875
Length adjustment: 10
Effective length of query: 464
Effective length of database: 865
Effective search space: 401360
Effective search space used: 401360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
