Query= MSMg01no511_a12.b1 MSMg01no511_a12.b1 CHROMAT_FILE:
MSMg01no511_a12.b1 PHD_FILE: MSMg01no511_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:46 2005
(537 letters)
>mm_chr5_58881798_58882734
Length = 937
Score = 959 bits (496), Expect = 0.0
Identities = 527/540 (97%), Gaps = 8/540 (1%)
Strand = Plus / Plus
Query: 4 ggaattcttttagattctcaga--tataagatacattctactttctaatcataagtaaat 61
||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttagat-c-cagagatataagatacattctactttctaatcataagtaaat 261
Query: 62 ggaaatcatccttcatgaccttgcagtatatggctgaaagtgaacactgattcttctaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggaaatcatccttcatgaccttgcagtatatggctgaaagtgaacactgattcttctaga 321
Query: 122 tagaaactcttcaagtttgccctcgccacttgtttatcctttaagggtgtgagtatgtat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagaaactcttcaagtttgccctcgccacttgtttatcctttaagggtgtgagtatgtat 381
Query: 182 gtgtgtgttgtatgtctgtgaatgtgtgtttatgtggggtgcacaggtttgcttgtaaat 241
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgtgtgttgtatatctgtgaatgtgtgtttatgtggggtgcacaggtttgcttgtaaat 441
Query: 242 gtgcatgcatgctcatgcacaggtgcatgcagctctacatgcaaatgtataggtgactgt 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 442 gtgcatgcatgctcatgcacaggtgcatgcagctctacatgcaaatgtataggtgactct 501
Query: 302 aggtcggagatggacagtgtgactcctccatcccagtttaccttactctttactggttta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 502 aggtcggagatggacagtgtgactcctccatcccagtttaccttactctttactgattta 561
Query: 362 aaagtattttaattaaaattaaaatttgattacatcatttcatcttcattttcccccctc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaagtattttaattaaaattaaaatttgattacatcatttcatcttcattttcccccctc 621
Query: 422 tacctctccctatgccgacatctcgatatttctaaaattcacagcacacttttcttgaat 481
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 622 tacctctccctatgccgacatctcgatatttctaaaattcacagcatacttttcttgaat 681
Query: 482 tgcctagattttatatatagtacgtctgtctcttcctct----atatattttttcatatg 537
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 682 tgcctagattttatatatagtatgtctgtctcttcctctctctatatattttttcatatg 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_a12.g1 MSMg01no511_a12.g1 CHROMAT_FILE:
MSMg01no511_a12.g1 PHD_FILE: MSMg01no511_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:46 2005
(511 letters)
>mm_chr5_59062941_59063851
Length = 911
Score = 973 bits (503), Expect = 0.0
Identities = 509/511 (99%)
Strand = Plus / Minus
Query: 1 tagagactatgtcatgaaacattcaaaaacagtgaatgtcttccattcaaagacttagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tagagactatgtcatgaaacattcaaaaacagtgaatgtcttccattcaaagacttagca 652
Query: 61 gttatgcgcatgtttgatgtacataatcttcaatagataataagatcttccaaagagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gttatgcgcatgtttgatgtacataatcttcaatagataataagatcttccaaagagaag 592
Query: 121 agttaaataggagaaattatgggaactaagctttattacaaatcttcatagagtgagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agttaaataggagaaattatgggaactaagctttattacaaatcttcatagagtgagagc 532
Query: 181 atatttaaaaaacatctctcatgtgttagcaacattttagagtacttttacaaaacgtat 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 531 atatttaaaaaacatctctcatgtattagcaacattttagagtacttttacaaaacgtat 472
Query: 241 aaggtaaagaaacagagataatataatatgacccaggtaggtgtgattaagcatcttgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaggtaaagaaacagagataatataatatgacccaggtaggtgtgattaagcatcttgat 412
Query: 301 attctaatttcttataataatacaaccttcactgttctttatggtggaaattgggtacca 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 411 attctaatttcttataataatacaaccttaactgttctttatggtggaaattgggtacca 352
Query: 361 tttctagcatatgtttataggttttgacagaaaattttgtaaaccatttcaagaagttag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tttctagcatatgtttataggttttgacagaaaattttgtaaaccatttcaagaagttag 292
Query: 421 acactaaaatatatgaaattgtatttgttcatatgctttgttctattattaagtgtaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 acactaaaatatatgaaattgtatttgttcatatgctttgttctattattaagtgtaaaa 232
Query: 481 aaatctagattattatgcagtgacataatag 511
|||||||||||||||||||||||||||||||
Sbjct: 231 aaatctagattattatgcagtgacataatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
