AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTATCAGCACAAC
AATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGG
AAATCCAGAACATGTTGTTTTAAAATGCCTTCAGTTGCTCTTTGATAAAG
TATGAGCACCAGGAAGATGTGAAAATGTAGAGGAATGTTAAACAGCATCT
CACATTACAGAAAATTTGTCTTGGCACTAATATCAGTTTATGTCACTGTA
AAGTGTAATAGAAATGAGGAAGAAATAGCCTGAATTTTGCAGAAGGAAAT
TCAGAGTTGAAAATACTTACCATTGATTACACATAGTGTGTTGATATCTA
AAAAAATCACAATCATATATTTAAATAAAGAAAAGACAACACTGAGAATG
AGCTTGAGTGGAAGAAAGGTGTTTGAGCTCAGCAAGTAGTTTAGAAATTT
CATTTTGACCACAGCATAAGAGTCACAAAAAGATTCTTTTCTAATTTGCA
TGTCTTTACAAAAGGCTTTTATTATTGCAAATTTAGGAAAAATGGATTGA
CACAAAAATAAGTACATTTTAGAACAATGGAAAAGAACTTCTACTAAGGA
AAATATTCTTTTTTAATGAACTGAATTCACAGGTCCATTTTTAAATGTGC
AGTTTGTTTCCAGGGTGATTTCATATAT

CCTGTACGCTTCCCTCTTGCGCCTCCCCCATATCCAAATCTCCTCCAAAC
GCCGAGGATCCCTCTTTACCTTTTTTTATCGCCCTATATTTTTACGAGAG
GTAGAAGATAAGGTGAACATCATTTGGAGAATATCACGGTCGCCCACTTT
CTCGGTAATTACGCGCTAATTTTCGCTACCGTCCACATTTACTGGTATAA
AGGCGGTGCACCGGGCGGGGTACTGGTTTTATCAATCCGTGCAGCGTATA
CTTATAGAGAAAGACATTGGGGTGTATGGCCGCAGCGCATCATTGCCCGA
GTGCGCCCGGTTCCCAGCCACCCTTACGGGGGCCGGTATTTTTGCGGCCT
TCCCTGGGGACACACTTTCAATCAGGTATCGGTAGTGTGAATTTACCGCC
CCTTGCATAATCCCCTTTTTTTCTCACCCGTCCGTTGTGGTGTCACTTCC
TCCCGTGCCCCGTATCCATTCCAAGACCCCGCATTTACCAACAGGCGATT
CGGAATATATCACCAACACGATAATATACTCCCCCCCAGTAGAGAACGAA
ATAAATTTATAAGTGCCCCCCTTTTCGTTTGAGTTTTTGAGCGCCCAGAG
TTAGTTCTCCGCCTCTATCAGTTTTCAGGCCGACGCCCTAGAAGAAGGTT
ACGGAGTAACCTNTTTNNCGAGAGAGTGATTTGCATTGGTGTTCGGCATT
TATGTTCATNNCACGGNANTATAAGAATTCATNNNAGCCCANAGACGANC
CNNNTGTNCNNTTGCCANGANGAACGGGATANNANCCGGTNTCNAATCTT
NCTAACTNAGCNNAANTGCCGATGNNCCTNTGGCCANGGAANNTGCTCNC
ATCGNCGNNTNNCCGCATCGAAGNTCTANCATCNNGTACGANTNCGCAAA
ACGTAAGTTCNCTGATNCGCTGTTNGNGAAGNCTTNTCCNTGTTCTAACA
NAAACTCAAAAGAACATCGGCCCCTCGTTNCGTTTATCCCTNCGA

Query= MSMg01no511_e04.b1 MSMg01no511_e04.b1 CHROMAT_FILE:
MSMg01no511_e04.b1 PHD_FILE: MSMg01no511_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:04 2005
         (633 letters)



>mm_chr5_13446412_13447444
          Length = 1033

 Score = 1154 bits (597), Expect = 0.0
 Identities = 621/629 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctttttaatagctgagtagtactccattgtgtatcagcacaacaatcaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctttttaatagctgagtagtactccattgtgtatcagcacaacaatcaaag 264

                                                                       
Query: 65  aaaatggaaaatgcaaaaagatcctaactcaaaacatccaggaaatccagaacatgttgt 124
           || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 aatatggaaaatgcaaaaagatcctaactcaaaacatccaggaaatccaggacatgttgt 324

                                                                       
Query: 125 tttaaaatgccttcagttgctctttgataaagtatgagcaccaggaagatgtgaaaatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 tttaaaatgccttcagttgctctttgataaagtatgagcaccaggaagatgtgaaaaggt 384

                                                                       
Query: 185 agaggaatgttaaacagcatctcacattacagaaaatttgtcttggcactaatatcagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 agaggaatgttaaacagcatctcacattacagaaaatttgtcttggcaccaatatcagtt 444

                                                                       
Query: 245 tatgtcactgtaaagtgtaatagaaatgaggaagaaatagcctgaattttgcagaaggaa 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tatgtcactgtaaagtgtaatagaaatgaggaaaaaatagcctgaattttgcagaaggaa 504

                                                                       
Query: 305 attcagagttgaaaatacttaccattgattacacatagtgtgttgatatctaaaaaaatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attcagagttgaaaatacttaccattgattacacatagtgtgttgatatctaaaaaaatc 564

                                                                       
Query: 365 acaatcatatatttaaataaagaaaagacaacactgagaatgagcttgagtggaagaaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaatcatatatttaaataaagaaaagacaacactgagaatgagcttgagtggaagaaag 624

                                                                       
Query: 425 gtgtttgagctcagcaagtagtttagaaatttcattttgaccacagcataagagtcacaa 484
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 625 gtgtttgagctcagcaagtagtttagaaattttattttgaccactgcataagagtcacaa 684

                                                                       
Query: 485 aaagattcttttctaatttgcatgtctttacaaaaggcttttattattgcaaatttagga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaagattcttttctaatttgcatgtctttacaaaaggcttttattattgcaaatttagga 744

                                                                       
Query: 545 aaaatggattgacacaaaaataagtacattttagaacaatggaaaagaacttctactaag 604
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaatggattgatacaaaaataagtacattttagaacaatggaaaagaacttctactaag 804

                                        
Query: 605 gaaaatattcttttttaatgaactgaatt 633
           |||||||||||||||||||||||||||||
Sbjct: 805 gaaaatattcttttttaatgaactgaatt 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)