Query= MSMg01no511_f18.b1 MSMg01no511_f18.b1 CHROMAT_FILE:
MSMg01no511_f18.b1 PHD_FILE: MSMg01no511_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:12 2005
(631 letters)
>mm_chr5_69855602_69856632
Length = 1031
Score = 1185 bits (613), Expect = 0.0
Identities = 628/633 (99%), Gaps = 2/633 (0%)
Strand = Plus / Plus
Query: 1 ccaatgtttcttgcctcgtgaagagtggaaagtttctgaaagccagtgcaacatctaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ccaatgtttcttgcctcgtgaagagtggaaagtttctgaaagccagtgcaacatctaaaa 258
Query: 61 ggagaataatgaaccagtgactaagctttgtgccttatttgaactctagggggcagtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggagaataatgaaccagtgactaagctttgtgccttatttgaactctagggggcagtgtt 318
Query: 121 ttttattctgagtgactacgctttgaacaatacattgctcagacatttaaatgtctcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttttattctgagtgactacgctttgaacaatacattgctcagacatttaaatgtctcttc 378
Query: 181 tggtttgttctccaaatttgatacctctggaaatagaaacttaaattaggatcattacct 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 tggtttgttctccaaatttgatacctctggaaatggaaacttaaattaggatcattacct 438
Query: 241 ttcctaaaattggtcatggtcttctggtaaaatatacttatttgtatattaaagcaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttcctaaaattggtcatggtcttctggtaaaatatacttatttgtatattaaagcaaaga 498
Query: 301 agatctagtaattgaggtgatcaattgaaatatatgaataaaagcaacaaggaaatgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agatctagtaattgaggtgatcaattgaaatatatgaataaaagcaacaaggaaatgaat 558
Query: 361 cagaggggccagtatagtagttaaatgtgttgagcatgtgtaagacctgaggtccagtct 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 559 cagaggggccagtatagtagttaaatgtgttgagcatgtgtaagaccttaggtccagact 618
Query: 421 cagtgctgaagaaagacaaagagaaagatgatagagagagcaaaaacaggaaagagagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagtgctgaagaaagacaaagagaaagatgatagagagagcaaaaacaggaaagagagaa 678
Query: 481 tggaagaaaggagatggattggaaggagaaaaggagaagaaa-a-cataatattaatagg 538
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 679 tggaagaaaggagatggattggaaggagaaaaggagaagaaagatcataatattaatagg 738
Query: 539 aaaatttatgccctttaatctcagatgaaataactgagcaaaagtaatttaaaaataata 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaaatttatgccctttaatctcagatgaaataactgagcaaaagtaatttaaaaataata 798
Query: 599 atagaaggtaagaaagactgaatagctcatagg 631
|||||||||||||||||||||||||||||||||
Sbjct: 799 atagaaggtaagaaagactgaatagctcatagg 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_f18.g1 MSMg01no511_f18.g1 CHROMAT_FILE:
MSMg01no511_f18.g1 PHD_FILE: MSMg01no511_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:13 2005
(523 letters)
>mm_chr5_70041010_70041932
Length = 923
Score = 988 bits (511), Expect = 0.0
Identities = 517/519 (99%)
Strand = Plus / Minus
Query: 5 gcctgacatcaaccaaacataaagagaaatgtaaagacttcatattaagaattatcttca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gcctgacatcaaccaaacataaagagaaatgtaaagacttcatattaagaattatcttca 664
Query: 65 cactggaaatcttcacaaaatgaagttactcaagtttatgtcactagaagttgaaaagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 cactggaaatcttcacaaaatgaagttactcaagtttatgtcactagaagttgaaaagga 604
Query: 125 aataaaaagaagtaaattgaataatttagaactttacaaaaaaaaaaagcccatggcctg 184
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 603 aataaaaggaagtaaattgaataatttagaagtttacaaaaaaaaaaagcccatggcctg 544
Query: 185 tcaatcaattcaaaacagaaaatctgaagttgttattaaaaatctccttaagggaacaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tcaatcaattcaaaacagaaaatctgaagttgttattaaaaatctccttaagggaacaag 484
Query: 245 gtgcattactcaatggtcaggatgattaatatctttaaatgttttactaatacgattaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gtgcattactcaatggtcaggatgattaatatctttaaatgttttactaatacgattaag 424
Query: 305 ttcgcagggtatttttctgtttataaaggataaacagaattagaaactatttgaagaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttcgcagggtatttttctgtttataaaggataaacagaattagaaactatttgaagaaca 364
Query: 365 aaggcctacaaagaaacgacagacctcatactgacagagtaaaatgtagtatgattaaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaggcctacaaagaaacgacagacctcatactgacagagtaaaatgtagtatgattaaga 304
Query: 425 attcttttcttttgtttagcccagcatcaattatgagggattatgtgtccttgtcaatgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 attcttttcttttgtttagcccagcatcaattatgagggattatgtgtccttgtcaatgg 244
Query: 485 atcatcttacagtacttttagctgaaatgaaactcatat 523
|||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atcatcttacagtacttttagctgaaatgaaactcatat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
