Query= MSMg01no511_j11.b1 MSMg01no511_j11.b1 CHROMAT_FILE:
MSMg01no511_j11.b1 PHD_FILE: MSMg01no511_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:30 2005
(566 letters)
>mm_chr5_48304269_48305233
Length = 965
Score = 942 bits (487), Expect = 0.0
Identities = 544/563 (96%), Gaps = 3/563 (0%)
Strand = Plus / Plus
Query: 5 gaattctctttctttctgtgtttctagcactggttatgggtttggggatttgagacaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttctttctgtgtttctagcactggttatgggtttggggatttgagacaaga 264
Query: 65 atatttttgaaacccacacccatgttctactgttacaagtgtactaggtcaaatgttcat 124
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 atatttt-gaaacccacacccatgttctactgttacaagtgtactaggtcaagtgttcat 323
Query: 125 aagattaaagtcaataggataattcccctgctaccaataagaactactgaagtcagcaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagattaaagtcaataggataattcccctgctaccaataagaactactgaagtcagcaat 383
Query: 185 atctagactccagaatccattctgctgccaaactggttgggctcatctggcaatgtttat 244
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 384 atctagactccagaatccattctgctgccaaactggttggactcatctggtaatgtttat 443
Query: 245 aataaaggaaggattctttattctagaaactttaaaatgatataaaaatatttaatgaag 304
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aataaaggaagggttctttattctagaaactttaaaatgatataaaaatatttaatgaag 503
Query: 305 gattcatcaaagaaatcatttggtaataatttttaaaagagatgcatataaaataattgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 gattcatcaaagaaatcatttggtaataatttttaaaagagatgcatataaaatatttgc 563
Query: 365 tgat-gcgttcattggggtgagaaaattccttcctggtggctaatttcatagtatgagac 423
| || | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taatag-gttcgttgggatgagaaaattccttcctggtggctaatttcatagtatgagac 622
Query: 424 ttgccatattggctgttgggaaaacaaatcatcaataattttacctggctattaacattt 483
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 623 ttgccatattggctgttgggaaaacaaatcatcaataattttacccagctattaacattt 682
Query: 484 tgagttgcaccaatgatgacctgaaggtatattcgtggctacaagtattatagtgtaacc 543
||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct: 683 tgagttgcaccaatgatgacctgaaggcatatccttggctacaagtattatagtgtaacc 742
Query: 544 cacctgatatgatttcttcctgt 566
|| ||||||||||||||||||
Sbjct: 743 tgccagatatgatttcttcctgt 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 965
Length adjustment: 10
Effective length of query: 556
Effective length of database: 955
Effective search space: 530980
Effective search space used: 530980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_j11.g1 MSMg01no511_j11.g1 CHROMAT_FILE:
MSMg01no511_j11.g1 PHD_FILE: MSMg01no511_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:30 2005
(497 letters)
>mm_chr5_48457111_48458007
Length = 897
Score = 922 bits (477), Expect = 0.0
Identities = 492/497 (98%)
Strand = Plus / Minus
Query: 1 cagtaaaatactttgaagattcctatgaaataagaaattgttataaacgtttgaaaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 cagtaaaatactttgaagattcctatgaaataagaaattgttataaacgtttgaaaacat 788
Query: 61 gtgcaattcctaaatgctttcttaggggccaaccccaaacaaggattgtcttcaagccat 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gtgcagttcctaaatgctttcttaggggccaaccccaaacaaggattgtcttcaagccat 728
Query: 121 acaattaaaaatacatttatatatatttatgtgtgcatgtgtatgtatgagagatggaga 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 727 acaattaaaaatacatttatatgtatttatgtgtgcatgtgtatgtatgagagatggaga 668
Query: 181 gggagaaagctggagaagagagactacaactttagtcccacagggtattaactcctttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gggagaaagctggagaagagagactacaactttagtcccacagggtattaactcctttta 608
Query: 241 atcacaaatgctgcagatgttggtcaagaagacccagcagtaataggggcaggaaagcag 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 607 atcacaaatgctgcagatgttggtcaagaagacccagcagtaatgggggcaggaaagcag 548
Query: 301 ttgagagatcaatggtctgcaggcaaccctttcagaaggggaacatgagaagtataggtg 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttgagagattaatggtctgcaggcaaccctttcagaaggggaacatgagaagtataggtg 488
Query: 361 acttgtgctcaggacttctctatagaaattcatgtttctattttttagaggagaaactga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 487 acttgtgctcaggacttctctatagaaattcatgtttctattttttagaggagacactga 428
Query: 421 atatggcttgctggaagccaactgaaaactagtgacctttatagtgagaaaacaacttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atatggcttgctggaagccaactgaaaactagtgacctttatagtgagaaaacaacttac 368
Query: 481 aaactgaaatggggcag 497
|||||||||||||||||
Sbjct: 367 aaactgaaatggggcag 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
