Query= MSMg01no511_j15.b1 MSMg01no511_j15.b1 CHROMAT_FILE:
MSMg01no511_j15.b1 PHD_FILE: MSMg01no511_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:31 2005
(685 letters)
>mm_chr5_96827218_96828303
Length = 1086
Score = 1270 bits (657), Expect = 0.0
Identities = 676/683 (98%), Gaps = 3/683 (0%)
Strand = Plus / Plus
Query: 5 gaattcttctagttgtttctagaattttctcacatttttcccattcctacatctaaagtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctagttgtttctagaattttctcacatttttcccattcctacatctaaagtg 264
Query: 65 tagtttttagatgaaatatcaagtgttaccagaagcttagaggagattcttaatagcctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtttttagatgaaatatcaagtgttaccagaagcttagaggagattcttaatagcctg 324
Query: 125 gggacctgggagaggagaggaagatttcataggcagagcaactcaagtgcatatgaaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggacctgggagaggagaggaagatttcataggcagagcaactcaagtgcatatgaaaag 384
Query: 185 aaggaaacat--taaatggccattttggcagccactttacaagaatctaacaagctatcg 242
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 aaggaaacatattaaatggccattttggcagccactttacaagaatctaacaagctattg 444
Query: 243 aagaaaagatatcttcttgtagttcttacttggtttcattgatggttctggagaaaaaaa 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagaaaagatatcttcttgtagttcttacttggtttcattgatggttctggagaaaaaa- 503
Query: 303 ttcagtcaggacataaatctaaactataagaaataatgtaagggatccatcccataatca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcagtcaggacataaatctaaactataagaaataatgtaagggatccatcccataatca 563
Query: 363 gcttccaaatgctgacactattgcatacactagcaagattttgctgaaaggacccagatg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcttccaaatgctgacactattgcatacactagcaagattttgctgaaaggacccagatg 623
Query: 423 tagctgtctcttgtgagactatgctggggcctagcaaacacagaagtggatgctcacagt 482
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 624 tagctgtctcttgtgagactaggccggggcctagcaaacacagaagtggatgctcacagt 683
Query: 483 catctattggatggatcacagggcccccaatggaggagctagagaaagtacccaaggagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catctattggatggatcacagggcccccaatggaggagctagagaaagtacccaaggagc 743
Query: 543 taaagggaactgcaaccctatatgtggaacaacaatatgaactaaccagtaccccagagc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaagggaactgcaaccctatatgtggaacaacaatatgaactaaccagtaccccagagc 803
Query: 603 tcttgactctagctgcatatgtatcaaaaggtggcctagtcggccatcactgcaaagaga 662
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 804 tcttgactctagctgcatatgtatcaaaagatggcctagtcggccatcactgcaaagaga 863
Query: 663 ggcccattggactcgcaaacttt 685
|||||||||||||||||||||||
Sbjct: 864 ggcccattggactcgcaaacttt 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space: 726300
Effective search space used: 726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_j15.g1 MSMg01no511_j15.g1 CHROMAT_FILE:
MSMg01no511_j15.g1 PHD_FILE: MSMg01no511_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:31 2005
(556 letters)
>mm_chr5_97005580_97006535
Length = 956
Score = 967 bits (500), Expect = 0.0
Identities = 542/556 (97%)
Strand = Plus / Minus
Query: 1 agcttcctcattttgacaacaaagatgtagcaaacatgtctatctccatgttgcccatag 60
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct: 557 agcttcctcattttgacaacaaagatgtagcaagcatgtctatctccatgtttcccacag 498
Query: 61 tccactgaagtatgacactgaagcacatatacatgacagagccaaaatgaaaaccccagt 120
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 497 tccactgaagtatggcattgaagcacatatacgtgacagagccaaaatgaaaaccccagt 438
Query: 121 ctttgcttctagaccctaagcttataacctgtgtactttacttcttccaactctagacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctttgcttctagaccctaagcttataacctgtgtactttacttcttccaactctagacct 378
Query: 181 gcaaaccaaagttggcattatcctacgactttgtctcagacctttctgcatatccaaaac 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 377 gcaaaccaaagttggcattatcctgcgactttgtctcagacctttctgcatatccaaaac 318
Query: 241 tctaagtaaacaaaagaaacattgatacatgcatttttaaaaaatggataaaatactact 300
||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 317 tctaaataaacaaaagaaacattgatacatgcattttaaaaaaatggacaaaatactact 258
Query: 301 gtttcctcttaaaacgttagcgtgtttgactataatcatgatcagtaacagtggtgcttt 360
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 257 gtttcctcttaaaacgttatcgtgtttgactgtaatcatgatcagtaacagtggtgcttt 198
Query: 361 gaatggactccaggatcctcagtgggtgaaactgtttggaaaggattagaaggtgtggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaatggactccaggatcctcagtgggtgaaactgtttggaaaggattagaaggtgtggcc 138
Query: 421 ttgttggaagaggtgtgtcactaggagttggctttgaagtgtcagaagccattctcagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ttgttggaagaggtgtgtcactaggagttggctttgaagtgtcagaagccattctcagta 78
Query: 481 tgttttatctggctcctgcttgtggatggagatgtgatttctcagctactcctccagcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 tgttttatctggctcctgcttgtggatggagatgtgatttctcagctactcctccagcta 18
Query: 541 cttgccaccatgcctt 556
|| ||||||||||||
Sbjct: 17 ctcaccaccatgcctt 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
