Query= MSMg01no511_l10.b1 MSMg01no511_l10.b1 CHROMAT_FILE:
MSMg01no511_l10.b1 PHD_FILE: MSMg01no511_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:39 2005
(479 letters)
>mm_chr5_117009807_117010683
Length = 877
Score = 853 bits (441), Expect = 0.0
Identities = 466/475 (98%), Gaps = 2/475 (0%)
Strand = Plus / Minus
Query: 5 gaattccagcctgttcagctctcgggcttcattctcttgggcaggttacctaattcgttg 64
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 810 gaattccagcctgcacagctctcgggcttcattctcttgggcaggttacctaagtcgttg 751
Query: 65 gaaccccagtgtccccaccattaacatggagggaagataacttagcaggttctgtgtgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gaaccccagtgtccccaccattaacatggagggaagataacttagcaggttctgtgtgtt 691
Query: 125 aaaatgaaacaatatcattaacacatacaatgtagcatgtgatcatactataaggagaga 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 690 aaaatgaaacaatatcattaacacatacaatgtagcatgtgggcatactataag--gaga 633
Query: 185 gagagagaggtattgattttctaagactctttaagagcaggaactggaatgaatgggttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gagagagaggtattgattttctaagactctttaagagcaggaactggaatgaatgggttc 573
Query: 245 aaatcgccaatcctggaaccatgagctttagcagagtcccacaatgctttgcagcaatgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaatcgccaatcctggaaccatgagctttagcagagtcccacaatgctttgcagcaatgg 513
Query: 305 gaagaatttctctaattttgtattgctgtaagtgggaaatatcccacccgggattcactt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaagaatttctctaattttgtattgctgtaagtgggaaatatcccacccgggattcactt 453
Query: 365 gaagctggatatccctacctgagaggttatgaagatctcaccgtgagatctttctgtggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaagctggatatccctacctgagaggttatgaagatctcaccgtgagatctttctgtggt 393
Query: 425 tggcgtgtctgtgaccacagacccataagtctcaactcaaaatggagtgacttcg 479
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 392 tggtgtgtctgtgaccacagacccagaagtctcaactcaaaatggagtgacttcg 338
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 877
Length adjustment: 10
Effective length of query: 469
Effective length of database: 867
Effective search space: 406623
Effective search space used: 406623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_l10.g1 MSMg01no511_l10.g1 CHROMAT_FILE:
MSMg01no511_l10.g1 PHD_FILE: MSMg01no511_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:39 2005
(463 letters)
>mm_chr5_116851569_116852431
Length = 863
Score = 799 bits (413), Expect = 0.0
Identities = 456/479 (95%), Gaps = 16/479 (3%)
Strand = Plus / Plus
Query: 1 aggacagatgaggagacaactgcagagacggagtgtcagtgacagggtcagggtcgtact 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 185 aggacagatgaggagacaactgcagagacggagtgtcagtgtctgggtcagggtcgtact 244
Query: 61 ggcagcaagcagcagaatcaggatcagaacccaagacgctttgcagcctcacaccagtcc 120
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 245 ggcagcaagcagcagaatcaggatcagaacccaagacactttgcagcctcacgccagtcc 304
Query: 121 ttcctcaaatcctgctatgagtctttactcatttggtgacactccataatactccagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttcctcaaatcctgctatgagtctttactcatttggtgacactccataatactccagatg 364
Query: 181 ggaaatggacaaagcagagacttctcttcctcttgtctggatttcagtgctgtgcctgac 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaaatggacaaagcagagacctctcttcctcttgtctggatttcagtgctgtgcctgac 424
Query: 241 atctgctggttccaatgaagatttggataggggagtggagctgcttatgtatggacatt- 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atctgctggttccaatgaagatttggataggggagtggagctgcttatgtatggacattt 484
Query: 300 ---------gg-----ga-caatcggccttgaaaggatagctcgttatgttcacagattc 344
|| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tattaattaggtattggaacaatcggccttgaaaggatagctcgttatgttcacagattc 544
Query: 345 catgaaggaagacatactgatccgctgggaccatgcaagatgggacaagggtggcatcta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 catgaaggaagacatactgatccgctgggaccatgcaagatgggacaagggtggcatcta 604
Query: 405 acactaactaaggtggatcaagagacagaagttgggagtgggggtggggcaggagtatt 463
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 605 acactaactaaggtggatcaggagacagaagttgggagtgggggtggggcaggaatatt 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
