ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCTCACCTGATGCATATCGAATGACATGAAGCACTTGAAAAAATTTTCA
ACATCCTTAATCATCAGGGAAATACAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGTTGACAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGTACACTCCTCCATTGTTGGTGGGAT
TGCAAGCTTATACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ATTGGACATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGTCCCAACTGGTAAGAATGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCATATGCTC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGT
ATTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGG
ATGGACCTGGAGGGTATCATTCTGAGTGAGGTAACCCAATCACAAAGGAA
CTCACACAATATATATCCACTGATAAGTGGATATTAGCCCAGAAACTTTA
TGATACCCCACATATAAGATACCATTTGTTTAAAGCATGTAACTTCCGAT
GAACGAATACCCCAGTGTGNACACTTTGCACCATCTTTAAAT

ATGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGCACATTCAAGCTTTACTTGCTTAAA
TATCCCTTTAAAAAGAATTAACAATTGGTATAAATAATGTTGCCAGAATT
AAGGAATGACTTTTATGAGGAGAATAAAGGAAAATTCCTAGTACATTGAA
CTCTTCATACCACAGCTGGAGGTAGTACTGCAAATTGTGGCATTGTAACT
AAACCAAACAGAAATGAAAATTCCAAATGGTAATCATTAACCTAAATAAA
GTGTCATAAACTATTTGATTGTTTTAAGTAGACTTGTCTTTTATTACCTC
AAATTAAACTAAGAAACCACAAAAGATATTTTCTAGCAGTAACAATAAAA
TAAAATAAAATAAATTAGCCATTAGCATATAGACATAGTAATAACATTCA
AAAGCAGTGCATTGAGCTTACCTTCCAAAAGCAAACATATTTATTTAAAC
TTCCTATTCAAAAAGATAATTATGGAAATTGACTTTATTGTTAACAGAGA
TGGACTCAGACTACGACAAAAATTCCTTTCCCAGGACAAGTAGTTTTTGT
TTTATTTCCTTCTCAGTAGTCTTGATATCATTTCTGTACTAATTACCATA
AGCTGATTTTTAAGTAGTAACTCCTATTAAAAAAATATGATAAGGGAGTA
ATATCCCACATGTACTAAGAGCTCTAGAAGCTGATATC

Query= MSMg01no511_o20.g1 MSMg01no511_o20.g1 CHROMAT_FILE:
MSMg01no511_o20.g1 PHD_FILE: MSMg01no511_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:55 2005
         (596 letters)



>mm_chr5_6934683_6935678
          Length = 996

 Score =  978 bits (506), Expect = 0.0
 Identities = 519/526 (98%), Gaps = 5/526 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcacattcaagctttacttgcttaaatatccctttaaaaagaattaacaattggtata 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 521 tagcacattcaagctttacttgcttaaatagccctttaaaaagaattaacaattggtata 462

                                                                       
Query: 61  aataatgttgccagaattaaggaatgacttttatgaggagaataaaggaaaattcctagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aataatgttgccagaattaaggaatgacttttatgaggagaataaaggaaaattcctagt 402

                                                                       
Query: 121 acattgaactcttcataccacagctggaggtagtactgcaaattgtggcattgtaactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acattgaactcttcataccacagctggaggtagtactgcaaattgtggcattgtaactaa 342

                                                                       
Query: 181 accaaacagaaatgaaaattccaaatggtaatcattaacctaaataaagtgtcataaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 accaaacagaaatgaaaattccaaatggtaatcattaacctaaataaagtgtcataaact 282

                                                                       
Query: 241 atttgattgttttaagtagacttgtcttttattacctcaaattaaactaagaaaccacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atttgattgttttaagtagacttgtcttttattacctcaaattaaactaagaaaccacaa 222

                                                                       
Query: 301 aagatattttctagcagtaacaataaaataaaataaaataaattagccattagcatatag 360
           |||| ||||||||||||||||     ||||||||||||||||||||||||||||||||||
Sbjct: 221 aagacattttctagcagtaac-----aataaaataaaataaattagccattagcatatag 167

                                                                       
Query: 361 acatagtaataacattcaaaagcagtgcattgagcttaccttccaaaagcaaacatattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 acatagtaataacattcaaaagcagtgcattgagcttaccttccaaaagcaaacatattt 107

                                                                       
Query: 421 atttaaacttcctattcaaaaagataattatggaaattgactttattgttaacagagatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atttaaacttcctattcaaaaagataattatggaaattgactttattgttaacagagatg 47

                                                         
Query: 481 gactcagactacgacaaaaattcctttcccaggacaagtagttttt 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  gactcagactacgacaaaaattcctttcccaggacaagtagttttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)