XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTTGT
AGCCTCTTGGTCCACCTCTTTTATTTGTCCTGAAGTATTGTCTCGAAATA
CAGGAAGATTCTCAGACATATTTTTGGTTTTGTTTGTTTGTGTGTTTGGC
TTTTCGAGACAGGGTTTCTCTGTGTAGCCCTAGCTTTCCTAGAACTCTCT
GCAGATCAGGCTGGCCTCAAATTCAGAGATTCGCTTGCCTCTGCCCCCAG
AGTACTGGGATTAAAGATGTGCATCACCACTGCCGCCTGATTCAGCTGGT
GCTCTTAACTGAGACATTTTTCCAGCTCCTAAATTTTATTTTCTTAGTAG
TCTATTTTTTGCTTAGTTTAGATTTTGCTTTGTTTGCCCATGTTAGGAAT
TAAACTTAGGGCTTGCAGCATCTGAGTAAATGCATTAGATCTGAGCCGCA
TCCCAAGCCTCTGTTTTTTCCTTTTGTTTTGAAATGGAGTCTCAGTGAGT
TAGCTGTCTAGGCTGACTTTGAACTCCCTTCACCTGAATTAAATTTCACC
ATGAACTTGTAATTTTTGAGCCTCAGCCTTTGGAGTTGGTAGAATCACAA
GTCTATACTAGGATCTTGCTCCATAGCTCAAACCACCCTACAGTTCTCAG
TGTCACTAGGGCAAGCTTCTAACTCATCACATTTATTCTGCCTCACTCTC
TAGTTCTGGGATTAAAGGCAGGACTCCAGTGTGTCCTGCTAATAGTCTTA
A

GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXNNAATTTCCCTTGGGGGAAAAGGGGCAAAAAGAAGAATTTTT
ATTCCCAAAAGGGGGCCCAAGNCCTCTGGTTTTCCTTCAGGGGGGAAAGG
CTGGCTGTTTTTGAAAAAAGAGTGGGGCCCTTGTGGAAAAAAAGGGGGGA
CCCCCCCCGGCCCCACCCCTCTTGGGGGGGTGGGAAAAAAAAAAATAAGC
CCCCAAAAAAGTTTTCCCCGGGGGAGGCCCGCGGGGGGCCTCCTTTTTCT
CCCACCCGGGGGGGGGTATAAAAAGTGGGGGGTTTTCTAAAAAGGGGGGG
TCTTTTTTTTTCCCTCCCCCCACCCACAAAGGGGAGGAGGGAGGGGCTAA
AAAAAAAACTTGTATAAAAAAAAGGGGGGGGGGGAAGAAGTTGGTGTGGT
CAAAAAAAAAACCCCTCTTTTTTTTTAACCCCCCCCCCTCCCTCTTTTTA
TATAAAAAAAAACAAAAATTTTTCTTTTTTTGTTTTTTTTGGATAAAAAA
AAAACACATTCTCTTCTTTCTCTTTTTNNTGCGTGTGTGTGGGGGGTGGG
GCGCGGTGTGTTGTTTTTTTTTTTTCTTACCCCACAACAAAAAAAAAATA
TTATTTTTCCTCTTTCCCTCTTCTCCTCCCCCGGGGGAGGGGANAAAAAA
AAATATATAAAAATAATCTGTCGTCTCTGTCTCTCTCCCCNCCTCTCTCC
CCTACTTTTGCTAGTCGCGGTAGAGG

Query= MSMg01no512_a16.b1 MSMg01no512_a16.b1 CHROMAT_FILE:
MSMg01no512_a16.b1 PHD_FILE: MSMg01no512_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:04 2005
         (713 letters)



>mm_chr5_33257056_33258168
          Length = 1113

 Score = 1284 bits (664), Expect = 0.0
 Identities = 698/710 (98%), Gaps = 3/710 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatttgtagcctcttgg-tccacctcttttatttgtcctgaagtattgtctcga 63
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccatttgcagcctcttgggtccacctcttttatttgtcctgaagtattgtctcga 263

                                                                       
Query: 64  aatacaggaagattctcagacatatttttggttttgtttgtttgtgtgtttggcttttcg 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 aatacaggaagattctcagacatatttttggttttgtttgtttgtgtgtttggctttttg 323

                                                                       
Query: 124 agacagggtttctctgtgtagccctagctttcctagaactctctgcagatcaggctggcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agacagggtttctctgtgtagccctagctttcctagaactctctgcagatcaggctggcc 383

                                                                       
Query: 184 tcaaattcagagattcgcttgcctctgcccccagagtactgggattaaagatgtgcatca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 384 tcaaattcagagattcgcttgcctctgcccccagagtactgggattaaagatgtgcacca 443

                                                                       
Query: 244 ccactgccgcctgattcagctggtgctcttaactgagacatttttccagctcctaaattt 303
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 ccactgccacctgattcagctggtgctcttaactgagacatttttccagcccctaaattt 503

                                                                       
Query: 304 tattttcttagtagtctattttttgcttagtttagattttgctttgtttgcccatgttag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tattttcttagtagtctattttttgcttagtttagattttgctttgtttgcccatgttag 563

                                                                       
Query: 364 gaattaaacttagggcttgcagcatctgagtaaatgcattagatctgagccgcatcccaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattaaacttagggcttgcagcatctgagtaaatgcattagatctgagccgcatcccaa 623

                                                                       
Query: 424 gcctctgttttttccttttgttttgaaatggagtctcagtgagttagctgtctaggctga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 gcctctgttttttccttttgttttgaaatggagtctcagtgagttagctgtctagactga 683

                                                                       
Query: 484 ctttgaactcccttcacctgaattaaatttcaccatgaacttgtaatttttgagcctcag 543
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 684 ctttgaactcccttcacctgaattaaatttcgccatgaacttgtaacttttgagcctcag 743

                                                                       
Query: 544 cctttggagttggtagaatcacaagtctatactaggatcttgctccatagctcaaaccac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctttggagttggtagaatcacaagtctatactaggatcttgctccatagctcaaaccac 803

                                                                       
Query: 604 cctacagttctcagtgtcactagggcaagcttctaactcatcacatttattctgcctcac 663
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cctagagttctcagtgtcactagggcaagcttctaactcatcacatttattctgcctcac 863

                                                             
Query: 664 tctctagttctgggattaaaggcaggactccagtgtgtcctgctaatagt 713
           ||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 864 tctctagttctgggattaaaggcaggactccagtgt--cctgctaatagt 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)