BAC Information

Click to search

BAC

Clone NameMSMg01-512B16
Chromosome5 (Build37)
Map Location 37,863,964 - 37,864,444
singlet/doubletsinglet
Overlap geneStk32b
Upstream geneTbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988
Downstream geneCytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512B16.T7 (MSMg01no512_b16.b1)MSMg01-512B16.TJ (MSMg01no512_b16.g1)
ACCAG585142AG585143
length746781
length of high quality
(start - end)		514 (59 - 572)575 (67 - 641)
definitionCHROMAT_FILE: MSMg01no512_b16.b1 PHD_FILE: MSMg01no512_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:09 2005CHROMAT_FILE: MSMg01no512_b16.g1 PHD_FILE: MSMg01no512_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGA
GTATTCCGGCTCACCACTTATCTCTACAGTTATTGGTTCATTTTAATGCA
AAGAATTATGACTTGAACCATCTGGAGACCGTGTATAGTATGTGTCTGTG
TGAGCTGGGTTCCCAATCATTGCCCACATACTGACAGACTGTGATATTAA
AATCCATATCACACCTGTTGGGACCCTGCTTTGCACCAGTCCCAAAGGAA
GTGTGGCCTGTGCTATCTCATTGTGGTATGGGGACTGTCATTAATCCATG
GAGCCCGAGACTTAAAGGCTAAATGCTTGACCAATGAGAATTTATTGAGC
ACTTACTATATGCTCAGTGAACATCATAAATACACTTTCTTTCTCAGTAA
TGTTACATAAAAGAGATTGTTACCTCTTCTGACAGATGAGGAAACAAGGC
CACTGTACCTGTTGAATATGGGACCTGAGTTCAGTGGTGACAAGTGACTT
TCTTTGTATGCCTGATCTCTCTGTTGACTGAATGTACTTAGAATCTCTCT
GGGCACATGAAAGTCAAGTTAAGGGGACAGAGATAANTATAGGTTCACAC
AGAAATTAGAATGGAGGCTGAAGAAGAAAGTTTTATAANGGAAGAGTGAT
AAGATGTGATCANGGACAGGCTGAAAGAGGGGNGGAAGCCCTAGTAACTC
CTGGTTCTTGACCAGCAGGTGAGCAATCATCACCTGGGAACCAAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGTG
TTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGT
TTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGT
ATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATG
GATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCAAGAATTTTATTAA
GGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATC
TTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATA
AAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAATAGTTTGT
GCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTA
AACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGC
TTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCT
GATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCC
AGGTTTTCCAGTTTTGTTGAGTATAAGCTTTTTGTAAAAGATCTGATGGT
GTTTTGGATTTCTTCAAGATCTGTTGNTATGCCTCCCTTTTCATTTCTGA
ATTTGTGGATAAGATTTTGTCCCTTGCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_b16.b1 MSMg01no512_b16.b1 CHROMAT_FILE:
MSMg01no512_b16.b1 PHD_FILE: MSMg01no512_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:09 2005
         (514 letters)



>mm_chr5_37863964_37864877
          Length = 914

 Score =  891 bits (461), Expect = 0.0
 Identities = 476/481 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcaccacttatctctacagttattggttcattttaatgcaaagaattatgacttgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctcaccacttatctctacagttattggttcattttaatgcaaagaattatgacttgaac 422

                                                                       
Query: 61  catctggagaccgtgtatagtatgtgtctgtgtgagctgggttcccaatcattgcccaca 120
           |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 421 catctggaaaccatgtatagtatgtgtctgggtgagctgggttcccaatcattgcccaca 362

                                                                       
Query: 121 tactgacagactgtgatattaaaatccatatcacacctgttgggaccctgctttgcacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tactgacagactgtgatattaaaatccatatcacacctgttgggaccctgctttgcacca 302

                                                                       
Query: 181 gtcccaaaggaagtgtggcctgtgctatctcattgtggtatggggactgtcattaatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtcccaaaggaagtgtggcctgtgctatctcattgtggtatggggactgtcattaatcca 242

                                                                       
Query: 241 tggagcccgagacttaaaggctaaatgcttgaccaatgagaatttattgagcacttacta 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggagcctgagacttaaaggctaaatgcttgaccaatgagaatttattgagcacttacta 182

                                                                       
Query: 301 tatgctcagtgaacatcataaatacactttctttctcagtaatgttacataaaagagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatgctcagtgaacatcataaatacactttctttctcagtaatgttacataaaagagatt 122

                                                                       
Query: 361 gttacctcttctgacagatgaggaaacaaggccactgtacctgttgaatatgggacctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttacctcttctgacagatgaggaaacaaggccactgtacctgttgaatatgggacctga 62

                                                                       
Query: 421 gttcagtggtgacaagtgactttctttgtatgcctgatctctctgttgactgaatgtact 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61  gttcagtggtgacaagtgactttctttgtatgcctgatctctctgtttactgaatgtact 2

            
Query: 481 t 481
           |
Sbjct: 1   t 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |