Query= MSMg01no512_b17.b1 MSMg01no512_b17.b1 CHROMAT_FILE:
MSMg01no512_b17.b1 PHD_FILE: MSMg01no512_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:09 2005
(638 letters)
>mm_chr5_41465317_41466354
Length = 1038
Score = 890 bits (460), Expect = 0.0
Identities = 472/476 (99%)
Strand = Plus / Minus
Query: 5 gaattcactcactgtcattgttaaagcagtttgggtactgaataggaaactggtgggtcc 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 476 gaattcactcactgtcattgttaaagcagtttgggtactgaataggaaactggtgggttc 417
Query: 65 tatggattgctcatggtacagcattctgatgggccatacagctgaggtacaactgaaggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tatggattgctcatggtacagcattctgatgggccatacagctgaggtacaactgaaggg 357
Query: 125 gtagcagaggaagcaaaattgtcagtgtttcccaggctataatgggtgaccaggctgagc 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtagcagaggaagcaaaaatgtcagtgtttcccaggctataatgggtgaccaggctgagc 297
Query: 185 atggtgcccttttctgtgtgaagaagactgtggatcattcagggatcaatcttctctagt 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 296 atggtgcccttttctgtgtgaagaagattgtggatcattcagggatcaatcttctctagt 237
Query: 245 tcacggctatgatgcttctcaaggtagagactggggaataaaatactcatgggagcaaat 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 236 tcacggctatgatgcttctcaaggtagagactggggaacaaaatactcatgggagcaaat 177
Query: 305 atggagacaaaatgtggacactgaaggaaaggccatccagagactgccccaccttgggat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 atggagacaaaatgtggacactgaaggaaaggccatccagagactgccccaccttgggat 117
Query: 365 tcatcctttatacagtcaccaaacccaggcactattgtgaatgccaagatgtggttgatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tcatcctttatacagtcaccaaacccaggcactattgtgaatgccaagatgtggttgatg 57
Query: 425 aaaggaacctgatatagctgtctcctgagaggctttgccaaagcctgacaaataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 aaaggaacctgatatagctgtctcctgagaggctttgccaaagcctgacaaataaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_b17.g1 MSMg01no512_b17.g1 CHROMAT_FILE:
MSMg01no512_b17.g1 PHD_FILE: MSMg01no512_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:09 2005
(510 letters)
>mm_chr5_10114432_10115341
Length = 910
Score = 973 bits (503), Expect = 0.0
Identities = 509/511 (99%), Gaps = 1/511 (0%)
Strand = Plus / Minus
Query: 1 agagcagagtttgaaagtaagggtaaagtaagtgaacactgatgtgtatgggcaaatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agagcagagtttgaaagtaagggtaaagtaagtgaacactgatgtgtatgggcaaatggc 536
Query: 61 agataactaagatgtcccctaatagttaggtagaaaataaagctctgattcagaagaaaa 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 535 agataactaagatgtcccctaatagttaggtagaaaataaagctcttattcagaagaaaa 476
Query: 121 agacaatggtttttcaggattttcaaaaaatgagagaggctttgtccctatttggacccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agacaatggtttttcaggattttcaaaaaatgagagaggctttgtccctatttggacccc 416
Query: 181 aaggggctttacatgagcacagatccctctggctgttgctcaatacgaaacacaatcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaggggctttacatgagcacagatccctctggctgttgctcaatacgaaacacaatcatg 356
Query: 241 gtctgacacatttcttgttttaggaggacatccaaatatcacatgtgccttctttagttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtctgacacatttcttgttttaggaggacatccaaatatcacatgtgccttctttagttt 296
Query: 301 gtaaaatgcccatgatatattaattgatttctgaattatatagaaaaatacctcaatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtaaaatgcccatgatatattaattgatttctgaattatatagaaaaatacctcaatata 236
Query: 361 tcgatctcttgtgttcattccttgtgtaaaatctttaaaagtggacaatatagattaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tcgatctcttgtgttcattccttgtgtaaaatctttaaaagtggacaatatagattaaaa 176
Query: 421 tt-aaaaaaaagataaaagcataaaaatgaaatagattcatcactgaattaatataggaa 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ttaaaaaaaaagataaaagcataaaaatgaaatagattcatcactgaattaatataggaa 116
Query: 480 aggtatatacacaaatgaaaaacattttcca 510
|||||||||||||||||||||||||||||||
Sbjct: 115 aggtatatacacaaatgaaaaacattttcca 85
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
