Query= MSMg01no512_f05.b1 MSMg01no512_f05.b1 CHROMAT_FILE:
MSMg01no512_f05.b1 PHD_FILE: MSMg01no512_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:26 2005
(572 letters)
>mm_chr5_46454422_46455393
Length = 972
Score = 1021 bits (528), Expect = 0.0
Identities = 558/568 (98%)
Strand = Plus / Minus
Query: 5 gaattccttgatgaaggaactctgctgcttgctaccaaattgcaactatggctccagagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaattccttgatgaaggaactctgctgcttgctaccaaattgcaactatggctccagagg 607
Query: 65 gcactccaccacttacaacttccaaacagctacagttctagaagatgcaaccaggccaga 124
||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct: 606 gcactccaccacttacaactttcaaacagctttagtcctagaagatgcaaccaggccaga 547
Query: 125 gtggggagcatttctcatggtaacctagcagaagacttataattgatgtaaaatgtcatt 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 546 gtggggagcatttctcatggtaacctagcagaagacttatgattgatgtaaaatgtcatt 487
Query: 185 tacataaagaactgccatggttgatgcaaatacctctgcccccaccattgcctaacaata 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 486 tacataaagaactgccatggttgatgcaaatacctctgcccccaccattgtctaacaata 427
Query: 245 tgatcaggtgattctactcaatagggaggtcagccaaaagacatgcctctctgctacctt 304
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 426 tgatcaggtgattctactcaatagggaggtcagccaaaagacatgcctctgtgctacctt 367
Query: 305 ctggggctgcaccatcagaccaaataaagaattctcttagagcaatcattccttgcctac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctggggctgcaccatcagaccaaataaagaattctcttagagcaatcattccttgcctac 307
Query: 365 ttttaaagtttatgtaagccttgctatatggtctgcactttcctggaacttatcacatag 424
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 306 ttttaaagtttatgtaagccttgctatatggtctgcacttgcctggaacttatcacgtag 247
Query: 425 gccaggcttttaaggaaatctcaagctgttctttcttaggtcttgtttttcagttccagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gccaggcttttaaggaaatctcaagctgttctttcttaggtcttgtttttcagttccagg 187
Query: 485 aattggactcagggccttgtacacactaggtatcactaaactatatttccagctccttgg 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aattggactcagggccttgtacacactaggtatcactaaactatatttccagctccttgt 127
Query: 545 ctgcttttgatctttatcattagtagta 572
||||||||||||||||||||||||||||
Sbjct: 126 ctgcttttgatctttatcattagtagta 99
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_f05.g1 MSMg01no512_f05.g1 CHROMAT_FILE:
MSMg01no512_f05.g1 PHD_FILE: MSMg01no512_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:26 2005
(583 letters)
>mm_chr5_46296605_46297586
Length = 982
Score = 1073 bits (555), Expect = 0.0
Identities = 576/583 (98%), Gaps = 1/583 (0%)
Strand = Plus / Plus
Query: 1 atatgtggtggagtgaaaaggatcttgaaaatcttagtaaagttacttaaggagctgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgtggtggagtgaaaaggatcttgaaaatcttagtaaagttacttaaggagctgaat 260
Query: 61 gatatggcagagacttttggtatttcaatgctttggatgattctactctgggttccttca 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gatatggcagagacttttggtatttcaatgctttggatgattctaccctgggttccttca 320
Query: 121 ggtcttttttgtgcagtcttacgagcattgttagaaaatggtatacttttgttcataggc 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggtcttttttgtgcagtcttacgagcattgttaggaaatggtatacttttgttcataggc 380
Query: 181 atagtctagacatgaggaccaagctatcattgatgtggtacttctgctgggacttgagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtctagacatgaggaccaagctatcattgatgtggtacttctgctgggacttgagtt 440
Query: 241 ttggtgaattaacacaaagttagaaaaatgaatgaggtcaactgggatccaaaaagtggc 300
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ttggtgaattaacacaaaattagaaaaatgaatgaggtcaactgggatccaaaa-gtggc 499
Query: 301 cattcaaggaacagcatagtacagcaagtggctaatcagattcacagaccaaacagcctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cattcaaggaacagcatagtacagcaagtggctaatcagattcacagaccaaacagcctc 559
Query: 361 attttaactcctggttagatttctaatgaccatagttagtgaagttttttaactttatgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attttaactcctggttagatttctaatgaccatagttagtgaagttttttaactttatgc 619
Query: 421 atcagtttccaagtggtatcattaatagaatctagtttctaaagctgtttggaaaactag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atcagtttccaagtggtatcattaatagaatctagtttctaaagctgtttggaaaactag 679
Query: 481 atacattaaaatatctaaaggataatgaataatggttggtatatataaagtataggatat 540
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 680 atacattagaatatctaaaggataatgaataatggtttttatatataaagtataggatat 739
Query: 541 gtcttagttatctttttattcctgtactaaaacatgaataaga 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtcttagttatctttttattcctgtactaaaacatgaataaga 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 982
Length adjustment: 10
Effective length of query: 573
Effective length of database: 972
Effective search space: 556956
Effective search space used: 556956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
