XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGTTTATTATTTATCAAAAATAGATTCTGAGCTCAAGGTCAGGAAGGG
GTGAAGTTTCACAGTGAATATCATAATTTCATTCTGGGATTTGAGACATG
AAGTGGTCTTCATTTGTGCCAGCATTCATAGGAAGAAGGCAAGGTTTCCA
TAGCTCTTTTAGAACTGCAGTTCTCATGGGGAAGAATGTGAGAACTTGGT
AGACATTATAGTAAAGAAGAAAGTGCATAAATATTAGTGATATATTCCAA
AAAAGGGCATGTTGTTTTGTTTTGTTTCTCAGAAATACTTTTGTTACTGC
CATCAATTCTGTACAAATCCAAATCAGAGGTTCACAAATGCTTTTAGCAA
GAGTTAAGTTGGAGAAAAGGTATTATGTTAGTCAGTGTTCTCTAGGGTCT
AGAAGAACCTGTAGAATGAGTCTCTATTTATGTATAAAAAGTATTTATTG
GAAAGCTGAAGTCCACGTAATACAACAATGGCTGGCTGTGAAGAGAGTCC
AAGAATACGGCAACTCAGTAGACAAAGCTGCCTGTCTCAGGTGGTTTTCG
GTCTATGCTGGAATCCTGAAGAAATAGAATAACATCAGTGATGGAATGAT
GGACTAGAAAGGCAAAAGAGAGCACAGAAAGAGCAAAAAACTTTCCTCTT
GGCTACATAGTGCATGTAATGAACCTGTGTATGT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTATGATTTCTGACAGGAATATTAGACC
AAGAAATAGAGACCTAGTTATAAAACCCGGATTCTAAAAGGCATTTGGCA
AAGAAGCCCATGGTCTCATCACAGTGACAACATAGGAAAGTGGGTTCTTT
GACATGATAATTGAATGCATAGGTGTTCGTGTATATTGTAAGGAAGGGAT
TAATGAGTGAATGTCAAACCCAGCAAAGGTCTGCAGCCAGGCATCATCCA
GGTGTCTTCTCTTCAATCTTATTCACTACAACATTTTAACTAAGCAGTTA
TCTGACTGCAGGGACATAGATAGCAGTTGATGAGATGTGACATGAAGGGC
TAACTCTCCTGCACAGTGGGATCAAGAATGTTATACACAATGACCCAAAA
AGTGTCTTTAAATTAAAGAAGGAGGAGGAAGAGGAGGAGGATGAGGAGAT
GANNAANATTATTTTTATTAATTNATTAATTTTTATATAGATAAATTTAA
TAGTAGGTATTGTTNTATTAATATTANAGTTATTAAATCTATTTTTTTTT
AAATAGTTTGTATTTTTTTTTTTATGGNNGGGTGGTATGAATCTTATCTG
AGNNGGAGTATANTTTTTTNTTTATAATTTATTATATGGAACTTCTAAAT
CATTCGTCCGTTTTTCCTGTCTTATCACCCTCCCCTTCTT

Query= MSMg01no512_m04.b1 MSMg01no512_m04.b1 CHROMAT_FILE:
MSMg01no512_m04.b1 PHD_FILE: MSMg01no512_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:02 2005
         (552 letters)



>mm_chr5_40518966_40519917
          Length = 952

 Score = 1013 bits (524), Expect = 0.0
 Identities = 542/548 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggtttattatttatcaaaaatagattctgagctcaaggtcaggaaggggtga 64
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 583 gaattccaggcttattatttatcaaaaatagattctgagctcaaggtcaggaagaggtga 524

                                                                       
Query: 65  agtttcacagtgaatatcataatttcattctgggatttgagacatgaagtggtcttcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agtttcacagtgaatatcataatttcattctgggatttgagacatgaagtggtcttcatt 464

                                                                       
Query: 125 tgtgccagcattcataggaagaaggcaaggtttccatagctcttttagaactgcagttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgtgccagcattcataggaagaaggcaaggtttccatagctcttttagaactgcagttct 404

                                                                       
Query: 185 catggggaagaatgtgagaacttggtagacattatagtaaagaagaaagtgcataaatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 catggggaagaatgtgagaacttggtagacattatagtaaagaagaaagtgcataaatat 344

                                                                       
Query: 245 tagtgatatattccaaaaaagggcatgttgttttgttttgtttctcagaaatacttttgt 304
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 343 tagtgatatattcaaaaaaagggcattttgttttgttttgtttctcagaaatacttttgt 284

                                                                       
Query: 305 tactgccatcaattctgtacaaatccaaatcagaggttcacaaatgcttttagcaagagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tactgccatcaattctgtacaaatccaaatcagaggttcacaaatgcttttagcaagagt 224

                                                                       
Query: 365 taagttggagaaaaggtattatgttagtcagtgttctctagggtctagaagaacctgtag 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 223 taagttggagaaaaggtattatgttagtcagtgttctctaggttctagaagaacctgtag 164

                                                                       
Query: 425 aatgagtctctatttatgtataaaaagtatttattggaaagctgaagtccacgtaataca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aatgagtctctatttatgtataaaaagtatttattggaaagctgaagtccacgtaataca 104

                                                                       
Query: 485 acaatggctggctgtgaagagagtccaagaatacggcaactcagtagacaaagctgcctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 103 acaatggctggctgtgaagagagtccaagaatacggcaactcagtagacaaggctgcctg 44

                   
Query: 545 tctcaggt 552
           ||||||||
Sbjct: 43  tctcaggt 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)