Query= MSMg01no512_n13.b1 MSMg01no512_n13.b1 CHROMAT_FILE:
MSMg01no512_n13.b1 PHD_FILE: MSMg01no512_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:08 2005
(652 letters)
>mm_chr5_4064480_4065530
Length = 1051
Score = 1154 bits (597), Expect = 0.0
Identities = 639/655 (97%), Gaps = 9/655 (1%)
Strand = Plus / Plus
Query: 1 gagctggagccggaggagaaaccgggaagcagaggccttgtggatcagaatctgaatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagctggagccggaggagaaaccgggaagcagaggccttgtggatcagaatctgaatgag 260
Query: 61 gtcatttttttgttgcttttacagtatttatgaggtggtattaaattttgtttcctttac 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcatttttt-gttgcttttacagtatttatgaggtggtattaaattttgtttcctttac 319
Query: 121 agtatttctgaggcagtatttatggctcagtgggttatctgcaggcctgagttcatgtta 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 agtatttctgaggcagtatttatggctcagtgggctatctgcaggcctgagttcatgtta 379
Query: 181 aggaaagagccagttccacaaagctgtgtgtgacatccaaatctgccctatggcattgct 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggaaagagccagttccacaaaactgtgtgtgacatccaaatctgccctatggcattgct 439
Query: 241 acactcacatatttatgcacacacacaatgataagggttttttatagttatgagtaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acactcacatatttatgcacacacacaatgataagggttttttatagttatgagtaattt 499
Query: 301 taatattttttta--tacccttaatgttttaaaatatttgtaaacttcaaatggtgttat 358
||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taaaatttt---acatacccttaatgttttaaaatatttgtaaacttcaaatggtgttat 556
Query: 359 tgagttacttaaatagttatgttcaagtcatcccaaaattgtgtctatagaattttatct 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgagttacttaaatagttatgtttaagtcatcccaaaattgtgtctatagaattttatct 616
Query: 419 ggagtgtgggtggtttgttctc-tagggaaggaaaataaactcctgctcatttgggagtc 477
||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct: 617 ggaatgtgggtggtttgtt-tcctagggaaggaaaatgaactcctgctcatttgggagtc 675
Query: 478 ttttctttctctctctgaaattgtcagccagccacctggaacttcactgacgatcggact 537
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 676 ttt-ctttctctctctgaaattgtcagccagccacctggaacttcactgatgatcggact 734
Query: 538 agaaattgggttcttcaacagaaaatgggagaggccaaagacaggaacttcacaaagttg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agaaattgggttcttcaacagaaaatgggagaggccaaagacaggaacttcacaaagttg 794
Query: 598 attgaaataaacggaggagaacttgaccataatcatgacttggaaatgatcagac 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 attgaaataaacggaggagaacttgaccataatcatgacttggaaatgatcagac 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1051
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1041
Effective search space: 668322
Effective search space used: 668322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_n13.g1 MSMg01no512_n13.g1 CHROMAT_FILE:
MSMg01no512_n13.g1 PHD_FILE: MSMg01no512_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:09 2005
(631 letters)
>mm_chr5_4184534_4185564
Length = 1031
Score = 1189 bits (615), Expect = 0.0
Identities = 627/631 (99%)
Strand = Plus / Minus
Query: 1 atcagtcataggaccagagatttttaatttaggaaaacagaactttcatatttaccatgt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 atcagtcattggaccagagatttttaatttaggaaaacagaactttcatatttaccatgt 772
Query: 61 gaaataaaataatcttctggcagtaaaaaaaagttgttctttttaaaactcgtcatagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gaaataaaataatcttctggcagtaaaaaaaagttgttctttttaaaactcgtcatagga 712
Query: 121 actgttctgaaaatgttagcagttcagaaacagtagatgcacaaagaccaggaaagactc 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 actgttctgaaaatgtaagcagttcagaaacagtagatgcacaaagaccaggaaagactc 652
Query: 181 agggaaagaattcaattcttgcaaattcctttgacgattcagacatttcaaagtaactgc 240
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 651 agggaaagaattcaattcttgcaaactcctttgacgattcagacatttcaaagtcactgc 592
Query: 241 tactcccagttgcttggtttgcatgtagagaagacttctataacatctggaaagacaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tactcccagttgcttggtttgcatgtagagaagacttctataacatctggaaagacaggg 532
Query: 301 atccaaggaaagtccctttcctaagaaacaagatggctgcagctctctcatggcagcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atccaaggaaagtccctttcctaagaaacaagatggctgcagctctctcatggcagcaca 472
Query: 361 ctgattaggcaaaataacaggaggaaggaggactttcttatcagaagtgggtactcgaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ctgattaggcaaaataacaggaggaaggaggactttcttatcagaagtgggtactcgaga 412
Query: 421 gagcactgggagaggggtggttcaggaaggcaccgccatcttggttcccaggtagctttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gagcactgggagaggggtggttcaggaaggcaccgccatcttggttcccaggtagctttc 352
Query: 481 actgtgtctgagaagctcactaagccttgctacttactcctcataggtttatctgtgagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 actgtgtctgagaagctcactaagccttgctacttactcctcataggtttatctgtgagg 292
Query: 541 agaggtgatttaaagttttcatttgttctgagggttatttttatgacttggaatgaatag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agaggtgatttaaagttttcatttgttctgagggttatttttatgacttggaatgaatag 232
Query: 601 tgtagacaagtataaatatatgcagctattt 631
|||||||||||||||||||||||||||||||
Sbjct: 231 tgtagacaagtataaatatatgcagctattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
