Query= MSMg01no512_o24.b1 MSMg01no512_o24.b1 CHROMAT_FILE:
MSMg01no512_o24.b1 PHD_FILE: MSMg01no512_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:16 2005
(561 letters)
>mm_chr5_150597266_150598226
Length = 961
Score = 1071 bits (554), Expect = 0.0
Identities = 556/557 (99%)
Strand = Plus / Minus
Query: 5 gaattctatgagaggaggtgagacactggcagaaataagggcacaatgggtttagttgtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaattctatgagaggaggtgagacactggcagaaataagggcacaatgggtttagttgtt 702
Query: 65 caccaagctgtgttagcaacccaaagtgtgctagttcacatgtggttttccaaaaactgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 caccaagctgtgttagcaacccaaagtgtgctagttcacatgtggttttccaaaaactgg 642
Query: 125 caccctaactttgccccttcattttgcaattctgggcaaccatatattattttgaaatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caccctaactttgccccttcattttgcaattctgggcaaccatatattattttgaaatga 582
Query: 185 agtgtatttatataccgaatcatgaaatgtaatgttgtagaaaaggaaaattgcctccca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agtgtatttatataccgaatcatgaaatgtaatgttgtagaaaaggaaaattgcctccca 522
Query: 245 tcaggactgaaaagggatttctaagagagacagggggaagcacatgccacgatataactc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tcaggactgaaaagggatttctaagagagacagggggaagcacatgccacgatataactc 462
Query: 305 ttacaactgatctaaattagatgcactgcaccatgtatgaaattctcaaaatataggaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttacaactgatctaaattagatgcactgcaccatgtatgaaattctcaaaatataggaaa 402
Query: 365 aaaagtaaaagaaatgagacgcattggtactagctcatggatttgtagtatatacgtggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaaagtaaaagaaatgagacgcattggtactagctcatggatttgtagtatatacgtggt 342
Query: 425 tagaaataccaacaggcatagacattgtatacgtgtgtatgtgtatgtgggtgcccaagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tagaaataccaacaggcatagacattgtatacgtgtgtatgtgtatgtgggtgcccaagc 282
Query: 485 ttatttactggccaaggtcacctgatatggccacaggaaattaaatcanggtggttggag 544
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 281 ttatttactggccaaggtcacctgatatggccacaggaaattaaatcagggtggttggag 222
Query: 545 ggtccacagcaaggctg 561
|||||||||||||||||
Sbjct: 221 ggtccacagcaaggctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_o24.g1 MSMg01no512_o24.g1 CHROMAT_FILE:
MSMg01no512_o24.g1 PHD_FILE: MSMg01no512_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:16 2005
(464 letters)
>mm_chr5_150470249_150471110
Length = 862
Score = 810 bits (419), Expect = 0.0
Identities = 453/465 (97%), Gaps = 3/465 (0%)
Strand = Plus / Plus
Query: 1 taaccctgctttgtttgacaaacatcagttcgacagtgtgggagcaaaacgactcatttg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaccctgctttgtttgacaaacatcagttcgacagtgtgggagcaaaacgactcattta 260
Query: 61 atggccaaggcttactcaggaatccctggttcagaaacaaggtgacatattcactgctgt 120
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 atggccaaggcttacccaggaatccctggttcagaaacaaggtgac--attcactgctgt 318
Query: 121 tctatcttgttaagtgttttctagtttctgaaggcgacatcctcaatgttgttgtactcc 180
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 319 tctatcttcttaagtgttttctggtttctgaaggcgacatcctcaatgttgttgtactcc 378
Query: 181 ccaggatttacttagcatggtatctctccagagagaaaacagttttaaactgtgctgtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccaggatttacttagcatggtatctctccagagagaaaacagttttaaactgtgctgtta 438
Query: 241 gtttattattttgatttcagtgctggggatgattatctagggcctaacacacaattgcta 300
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcttattattttgattttggtgctggggatgattatctagggcctaacacacaattgcta 498
Query: 301 ggcaagcactttcccaccgagctacaatcctagtccccggatgttcagtgtaacccaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggcaagcactttcccaccgagctacaatcctagtccccggatgttcagtgtaacccaaag 558
Query: 361 -ctcctgtgtgcagggttggctctcaggtcggtgctcctggaaggtggcagacactttaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 559 gctcctgtgtgcagggttggctctcaggtcggtgctcctggaaggtggcagacactctaa 618
Query: 420 gtggtaggaggaagttaggtcattggtggtacagtcttaaaggag 464
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtggtaggaggaagttaggtcattggtggtacagtcttaaaggag 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 862
Length adjustment: 10
Effective length of query: 454
Effective length of database: 852
Effective search space: 386808
Effective search space used: 386808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
